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Using Latent Class Analysis to Identify ARDS Sub-phenotypes for Enhanced Machine Learning Predictive Performance

arXiv.org Machine Learning

In this work, we utilize Machine Learning for early recognition of patients at high risk of acute respiratory distress syndrome (ARDS), which is critical for successful prevention strategies for this devastating syndrome. The difficulty in early ARDS recognition stems from its complex and heterogenous nature. In this study, we integrate knowledge of the heterogeneity of ARDS patients into predictive model building. Using MIMIC-III data, we first apply latent class analysis (LCA) to identify homogeneous sub-groups in the ARDS population, and then build predictive models on the partitioned data. The results indicate that significantly improved performances of prediction can be obtained for two of the three identified sub-phenotypes of ARDS. Experiments suggests that identifying sub-phenotypes is beneficial for building predictive model for ARDS.


Barking up the Right Tree: Improving Cross-Corpus Speech Emotion Recognition with Adversarial Discriminative Domain Generalization (ADDoG)

arXiv.org Machine Learning

Automatic speech emotion recognition provides computers with critical context to enable user understanding. While methods trained and tested within the same dataset have been shown successful, they often fail when applied to unseen datasets. To address this, recent work has focused on adversarial methods to find more generalized representations of emotional speech. However, many of these methods have issues converging, and only involve datasets collected in laboratory conditions. In this paper, we introduce Adversarial Discriminative Domain Generalization (ADDoG), which follows an easier to train "meet in the middle" approach. The model iteratively moves representations learned for each dataset closer to one another, improving cross-dataset generalization. We also introduce Multiclass ADDoG, or MADDoG, which is able to extend the proposed method to more than two datasets, simultaneously. Our results show consistent convergence for the introduced methods, with significantly improved results when not using labels from the target dataset. We also show how, in most cases, ADDoG and MADDoG can be used to improve upon baseline state-of-the-art methods when target dataset labels are added and in-the-wild data are considered. Even though our experiments focus on cross-corpus speech emotion, these methods could be used to remove unwanted factors of variation in other settings.


Learning to Weight for Text Classification

arXiv.org Machine Learning

In information retrieval (IR) and related tasks, term weighting approaches typically consider the frequency of the term in the document and in the collection in order to compute a score reflecting the importance of the term for the document. In tasks characterized by the presence of training data (such as text classification) it seems logical that the term weighting function should take into account the distribution (as estimated from training data) of the term across the classes of interest. Although `supervised term weighting' approaches that use this intuition have been described before, they have failed to show consistent improvements. In this article we analyse the possible reasons for this failure, and call consolidated assumptions into question. Following this criticism we propose a novel supervised term weighting approach that, instead of relying on any predefined formula, learns a term weighting function optimised on the training set of interest; we dub this approach \emph{Learning to Weight} (LTW). The experiments that we run on several well-known benchmarks, and using different learning methods, show that our method outperforms previous term weighting approaches in text classification.


Multimodal Deep Network Embedding with Integrated Structure and Attribute Information

arXiv.org Machine Learning

Network embedding is the process of learning low-dimensional representations for nodes in a network, while preserving node features. Existing studies only leverage network structure information and focus on preserving structural features. However, nodes in real-world networks often have a rich set of attributes providing extra semantic information. It has been demonstrated that both structural and attribute features are important for network analysis tasks. To preserve both features, we investigate the problem of integrating structure and attribute information to perform network embedding and propose a Multimodal Deep Network Embedding (MDNE) method. MDNE captures the non-linear network structures and the complex interactions among structures and attributes, using a deep model consisting of multiple layers of non-linear functions. Since structures and attributes are two different types of information, a multimodal learning method is adopted to pre-process them and help the model to better capture the correlations between node structure and attribute information. We employ both structural proximity and attribute proximity in the loss function to preserve the respective features and the representations are obtained by minimizing the loss function. Results of extensive experiments on four real-world datasets show that the proposed method performs significantly better than baselines on a variety of tasks, which demonstrate the effectiveness and generality of our method.


PAL: A fast DNN optimization method based on curvature information

arXiv.org Machine Learning

We present a novel optimizer for deep neural networks that combines the ideas of Netwon's method and line search to efficiently compute and utilize curvature information. Our work is based on empirical observation suggesting that the loss function can be approximated by a parabola in negative gradient direction. Due to this approximation, we are able to perform a variable and loss function dependent parameter update by jumping directly into the minimum of the approximated parabola. To evaluate our optimizer, we performed multiple comprehensive hyperparameter grid searches for which we trained more than 20000 networks in total. We can show that PAL outperforms RMSPROP, and can outperform gradient descent with momentum and ADAM on large-scale high-dimensional machine learning problems. Furthermore, PAL requires up to 52.2% less training epochs. PyTorch and TensorFlow implementations are provided at https://github.com/cogsys-tuebingen/PAL.


On the Stability and Generalization of Learning with Kernel Activation Functions

arXiv.org Machine Learning

In this brief we investigate the generalization properties of a recently-proposed class of non-parametric activation functions, the kernel activation functions (KAFs). KAFs introduce additional parameters in the learning process in order to adapt nonlinearities individually on a per-neuron basis, exploiting a cheap kernel expansion of every activation value. While this increase in flexibility has been shown to provide significant improvements in practice, a theoretical proof for its generalization capability has not been addressed yet in the literature. Here, we leverage recent literature on the stability properties of non-convex models trained via stochastic gradient descent (SGD). By indirectly proving two key smoothness properties of the models under consideration, we prove that neural networks endowed with KAFs generalize well when trained with SGD for a finite number of steps. Interestingly, our analysis provides a guideline for selecting one of the hyper-parameters of the model, the bandwidth of the scalar Gaussian kernel. A short experimental evaluation validates the proof.


Model Vulnerability to Distributional Shifts over Image Transformation Sets

arXiv.org Machine Learning

We are concerned with the vulnerability of computer vision models to distributional shifts. We cast this problem in terms of combinatorial optimization, evaluating the regions in the input space where a (black-box) model is more vulnerable. This is carried out by combining image transformations from a given set and standard search algorithms. We embed this idea in a training procedure, where we define new data augmentation rules over iterations, accordingly to the image transformations that the current model is most vulnerable to. An empirical evaluation on classification and semantic segmentation problems suggests that the devised algorithm allows to train models more robust against content-preserving image transformations, and in general, against distributional shifts.


A Survey on Graph Kernels

arXiv.org Machine Learning

Graph kernels have become an established and widely-used technique for solving classification tasks on graphs. This survey gives a comprehensive overview of techniques for kernel-based graph classification developed in the past 15 years. We describe and categorize graph kernels based on properties inherent to their design, such as the nature of their extracted graph features, their method of computation and their applicability to problems in practice. In an extensive experimental evaluation, we study the classification accuracy of a large suite of graph kernels on established benchmarks as well as new datasets. We compare the performance of popular kernels with several baseline methods and study the effect of applying a Gaussian RBF kernel to the metric induced by a graph kernel. In doing so, we find that simple baselines become competitive after this transformation on some datasets. Moreover, we study the extent to which existing graph kernels agree in their predictions (and prediction errors) and obtain a data-driven categorization of kernels as result. Finally, based on our experimental results, we derive a practitioner's guide to kernel-based graph classification.


SUSI: Supervised Self-Organizing Maps for Regression and Classification in Python

arXiv.org Machine Learning

In many research fields, the sizes of the existing datasets vary widely. Hence, there is a need for machine learning techniques which are well-suited for these different datasets. One possible technique is the self-organizing map (SOM), a type of artificial neural network which is, so far, weakly represented in the field of machine learning. The SOM's unique characteristic is the neighborhood relationship of the output neurons. This relationship improves the ability of generalization on small datasets. SOMs are mostly applied in unsupervised learning and few studies focus on using SOMs as supervised learning approach. Furthermore, no appropriate SOM package is available with respect to machine learning standards and in the widely used programming language Python. In this paper, we introduce the freely available SUpervised Self-organIzing maps (SUSI) Python package which performs supervised regression and classification. The implementation of SUSI is described with respect to the underlying mathematics. Then, we present first evaluations of the SOM for regression and classification datasets from two different domains of geospatial image analysis. Despite the early stage of its development, the SUSI framework performs well and is characterized by only small performance differences between the training and the test datasets. A comparison of the SUSI framework with existing Python and R packages demonstrates the importance of the SUSI framework. In future work, the SUSI framework will be extended, optimized and upgraded e.g. with tools to better understand and visualize the input data as well as the handling of missing and incomplete data.


Amortized Object and Scene Perception for Long-term Robot Manipulation

arXiv.org Artificial Intelligence

Mobile robots, performing long-term manipulation activities in human environments, have to perceive a wide variety of objects possessing very different visual characteristics and need to reliably keep track of these throughout the execution of a task. In order to be efficient, robot perception capabilities need to go beyond what is currently perceivable and should be able to answer queries about both current and past scenes. In this paper we investigate a perception system for long-term robot manipulation that keeps track of the changing environment and builds a representation of the perceived world. Specifically we introduce an amortized component that spreads perception tasks throughout the execution cycle. The resulting query driven perception system asynchronously integrates results from logged images into a symbolic and numeric (what we call sub-symbolic) representation that forms the perceptual belief state of the robot.