Background, Machine learning models for repeated measurements are limited. Using topological data analysis (TDA), we present a classifier for repeated measurements which samples from the data space and builds a network graph based on the data topology. When applying this to two case studies, accuracy exceeds alternative models with additional benefits such as reporting data subsets with high purity along with feature values. Results, For 300 examples of 3 tree species, the accuracy reached 80% after 30 datapoints, which was improved to 90% after increased sampling to 400 datapoints. Using data from 100 examples of each of 6 point processes, the classifier achieved 96.8% accuracy. In both datasets, the TDA classifier outperformed an alternative model. Conclusions, This algorithm and software can be beneficial for repeated measurement data common in biological sciences, as both an accurate classifier and a feature selection tool.

This work examines the problem of graph learning over a diffusion network when data can be collected from a limited portion of the network (partial observability). While most works in the literature rely on a degree of sparsity to provide guarantees of consistent graph recovery, our analysis moves away from this condition and includes the demanding setting of dense connectivity. We ascertain that suitable estimators of the combination matrix (i.e., the matrix that quantifies the pairwise interaction between nodes) possess an identifiability gap that enables the discrimination between connected and disconnected nodes. Fundamental conditions are established under which the subgraph of monitored nodes can be recovered, with high probability as the network size increases, through universal clustering algorithms. This claim is proved for three matrix estimators: i) the Granger estimator that adapts to the partial observability setting the solution that is optimal under full observability ; ii) the one-lag correlation matrix; and iii) the residual estimator based on the difference between two consecutive time samples. Comparison among the estimators is performed through illustrative examples that reveal how estimators that are not optimal in the full observability regime can outperform the Granger estimator in the partial observability regime. The analysis reveals that the fundamental property enabling consistent graph learning is the statistical concentration of node degrees, rather than the sparsity of connections.

Our problem of interest is to cluster vertices of a graph by identifying its underlying community structure. Among various vertex clustering approaches, spectral clustering is one of the most popular methods, because it is easy to implement while often outperforming traditional clustering algorithms. However, there are two inherent model selection problems in spectral clustering, namely estimating the embedding dimension and number of clusters. This paper attempts to address the issue by establishing a novel model selection framework specifically for vertex clustering on graphs under a stochastic block model. The first contribution is a probabilistic model which approximates the distribution of the extended spectral embedding of a graph. The model is constructed based on a theoretical result of asymptotic normality of the informative part of the embedding, and on a simulation result of limiting behavior of the redundant part of the embedding. The second contribution is a simultaneous model selection framework. In contrast with the traditional approaches, our model selection procedure estimates embedding dimension and number of clusters simultaneously. Based on our proposed distributional model, a theorem on the consistency of the estimates of model parameters is stated and proven. The theorem provides a statistical support for the validity of our method. Heuristic algorithms via the simultaneous model selection framework for vertex clustering are proposed, with good performance shown in the experiment on synthetic data and on the real application of connectome analysis.

Can we automatically design a Convolutional Network (ConvNet) with the highest image classification accuracy under the runtime constraint of a mobile device? Neural architecture search (NAS) has revolutionized the design of hardware-efficient ConvNets by automating this process. However, the NAS problem remains challenging due to the combinatorially large design space, causing a significant searching time (at least 200 GPU-hours). To alleviate this complexity, we propose Single-Path NAS, a novel differentiable NAS method for designing hardware-efficient ConvNets in less than 4 hours. Our contributions are as follows: 1. Single-path search space: Compared to previous differentiable NAS methods, Single-Path NAS uses one single-path over-parameterized ConvNet to encode all architectural decisions with shared convolutional kernel parameters, hence drastically decreasing the number of trainable parameters and the search cost down to few epochs. 2. Hardware-efficient ImageNet classification: Single-Path NAS achieves 74.96% top-1 accuracy on ImageNet with 79ms latency on a Pixel 1 phone, which is state-of-the-art accuracy compared to NAS methods with similar constraints (<80ms). 3. NAS efficiency: Single-Path NAS search cost is only 8 epochs (30 TPU-hours), which is up to 5,000x faster compared to prior work. 4. Reproducibility: Unlike all recent mobile-efficient NAS methods which only release pretrained models, we open-source our entire codebase at: https://github.com/dstamoulis/single-path-nas.

Attention Model has now become an important concept in neural networks that has been researched within diverse application domains. This survey provides a structured and comprehensive overview of the developments in modeling attention. In particular, we propose a taxonomy which groups existing techniques into coherent categories. We review the different neural architectures in which attention has been incorporated, and also show how attention improves interpretability of neural models. Finally, we discuss some applications in which modeling attention has a significant impact. We hope this survey will provide a succinct introduction to attention models and guide practitioners while developing approaches for their applications.

Objective: A variety of pattern analysis techniques for model training in brain interfaces exploit neural feature dimensionality reduction based on feature ranking and selection heuristics. In the light of broad evidence demonstrating the potential sub-optimality of ranking based feature selection by any criterion, we propose to extend this focus with an information theoretic learning driven feature transformation concept. Methods: We present a maximum mutual information linear transformation (MMI-LinT), and a nonlinear transformation (MMI-NonLinT) framework derived by a general definition of the feature transformation learning problem. Empirical assessments are performed based on electroencephalographic (EEG) data recorded during a four class motor imagery brain-computer interface (BCI) task. Exploiting state-of-the-art methods for initial feature vector construction, we compare the proposed approaches with conventional feature selection based dimensionality reduction techniques which are widely used in brain interfaces. Furthermore, for the multi-class problem, we present and exploit a hierarchical graphical model based BCI decoding system. Results: Both binary and multi-class decoding analyses demonstrate significantly better performances with the proposed methods. Conclusion: Information theoretic feature transformations are capable of tackling potential confounders of conventional approaches in various settings. Significance: We argue that this concept provides significant insights to extend the focus on feature selection heuristics to a broader definition of feature transformation learning in brain interfaces.

Adaptive importance samplers are adaptive Monte Carlo algorithms to estimate expectations with respect to some target distribution which adapt themselves to obtain better estimators over iterations. Although it is straightforward to show that they have the same $\mathcal{O}(1/\sqrt{N})$ convergence rate as the importance sampling where $N$ is the number of Monte Carlo samples, the behaviour of adaptive importance samplers over the number of iterations has been left relatively unexplored despite these adaptive algorithms aim at improving the proposal quality iteratively. In this work, we explore an adaptation strategy based on convex optimisation which leads to a class of adaptive importance samplers, termed optimised adaptive importance samplers (OAIS). These samplers rely on an adaptation idea based on minimizing the $\chi^2$-divergence between an exponential family proposal and the target. The analysed algorithms are closely related to the adaptive importance samplers which minimise the variance of the weight function. We first prove non-asymptotic error bounds for the mean squared errors (MSEs) of these algorithms, which explicitly depend on the number of iterations and the number of particles together. The non-asymptotic bounds derived in this paper imply that when the target is from the exponential family, the $L_2$ errors of the optimised samplers converge to the perfect Monte Carlo sampling error $\mathcal{O}(1/\sqrt{N})$. We also show that when the target is not from the exponential family, the asymptotic error rate is $\mathcal{O}(\sqrt{\rho^\star/N})$ where $\rho^\star$ is the minimum $\chi^2$-divergence between the target and an exponential family proposal.

Wasserstein distances are increasingly used in a wide variety of applications in machine learning. Sliced Wasserstein distances form an important subclass which may be estimated efficiently through one-dimensional sorting operations. In this paper, we propose a new variant of sliced Wasserstein distance, study the use of orthogonal coupling in Monte Carlo estimation of Wasserstein distances and draw connections with stratified sampling, and evaluate our approaches experimentally in a range of large-scale experiments in generative modelling and reinforcement learning.

A key stepping stone in the development of an artificial general intelligence (a machine that can perform any task), is the production of agents that can perform multiple tasks at once instead of just one. Unfortunately, canonical methods are very prone to catastrophic forgetting (CF) - the act of overwriting previous knowledge about a task when learning a new task. Recent efforts have developed techniques for overcoming CF in learning systems, but no attempt has been made to apply these new techniques to evolutionary systems. This research presents a novel technique, weight protection, for reducing CF in evolutionary systems by adapting a method from learning systems. It is used in conjunction with other evolutionary approaches for overcoming CF and is shown to be effective at alleviating CF when applied to a suite of reinforcement learning tasks. It is speculated that this work could indicate the potential for a wider application of existing learning-based approaches to evolutionary systems and that evolutionary techniques may be competitive with or better than learning systems when it comes to reducing CF.

Physical construction -- the ability to compose objects, subject to physical dynamics, in order to serve some function -- is fundamental to human intelligence. Here we introduce a suite of challenging physical construction tasks inspired by how children play with blocks, such as matching a target configuration, stacking and attaching blocks to connect objects together, and creating shelter-like structures over target objects. We then examine how a range of modern deep reinforcement learning agents fare on these challenges, and introduce several new approaches which provide superior performance. Our results show that agents which use structured representations (e.g., objects and scene graphs) and structured policies (e.g., object-centric actions) outperform those which use less structured representations, and generalize better beyond their training when asked to reason about larger scenes. Agents which use model-based planning via Monte-Carlo Tree Search also outperform strictly model-free agents in our most challenging construction problems. We conclude that approaches which combine structured representations and reasoning with powerful learning are a key path toward agents that possess rich intuitive physics, scene understanding, and planning.