Research into automated systems for detecting and classifying marine mammals in acoustic recordings is expanding internationally due to the necessity to analyze large collections of data for conservation purposes. In this work, we present a Convolutional Neural Network that is capable of classifying the vocalizations of three species of whales, non-biological sources of noise, and a fifth class pertaining to ambient noise. In this way, the classifier is capable of detecting the presence and absence of whale vocalizations in an acoustic recording. Through transfer learning, we show that the classifier is capable of learning high-level representations and can generalize to additional species. We also propose a novel representation of acoustic signals that builds upon the commonly used spectrogram representation by way of interpolating and stacking multiple spectrograms produced using different Short-time Fourier Transform (STFT) parameters. The proposed representation is particularly effective for the task of marine mammal species classification where the acoustic events we are attempting to classify are sensitive to the parameters of the STFT.

Although large annotated sleep databases are publicly available, and might be used to train automated scoring algorithms, it might still be a challenge to develop an optimal algorithm for your personal sleep study, which might have few subjects or rely on a different recording setup. Both directly applying a learned algorithm or retraining the algorithm on your rather small database is suboptimal. And definitely state-of-the-art sleep staging algorithms based on deep neural networks demand a large amount of data to be trained. This work presents a deep transfer learning approach to overcome the channel mismatch problem and enable transferring knowledge from a large dataset to a small cohort for automatic sleep staging. We start from a generic end-to-end deep learning framework for sequence-to-sequence sleep staging and derive two networks adhering to this framework as a device for transfer learning. The networks are first trained in the source domain (i.e. the large database). The pretrained networks are then finetuned in the target domain, i.e. the small cohort, to complete knowledge transfer. We employ the Montreal Archive of Sleep Studies (MASS) database consisting of 200 subjects as the source domain and study deep transfer learning on four different target domains: the Sleep Cassette subset and the Sleep Telemetry subset of the Sleep-EDF Expanded database, the Surrey-cEEGGrid database, and the Surrey-PSG database. The target domains are purposely adopted to cover different degrees of channel mismatch to the source domain. Our experimental results show significant performance improvement on automatic sleep staging on the target domains achieved with the proposed deep transfer learning approach and we discuss the impact of various fine tuning approaches.

Deep learning models, which are increasingly being used in the field of medical image analysis, come with a major security risk, namely, their vulnerability to adversarial examples. Adversarial examples are carefully crafted samples that force machine learning models to make mistakes during testing time. These malicious samples have been shown to be highly effective in misguiding classification tasks. However, research on the influence of adversarial examples on segmentation is significantly lacking. Given that a large portion of medical imaging problems are effectively segmentation problems, we analyze the impact of adversarial examples on deep learning-based image segmentation models. Specifically, we expose the vulnerability of these models to adversarial examples by proposing the Adaptive Segmentation Mask Attack (ASMA). This novel algorithm makes it possible to craft targeted adversarial examples that come with (1) high intersection-over-union rates between the target adversarial mask and the prediction and (2) with perturbation that is, for the most part, invisible to the bare eye. We lay out experimental and visual evidence by showing results obtained for the ISIC skin lesion segmentation challenge and the problem of glaucoma optic disc segmentation. An implementation of this algorithm and additional examples can be found at https://github.com/utkuozbulak/

The problem of Multiple Object Tracking (MOT) consists in following the trajectory of different objects in a sequence, usually a video. In recent years, with the rise of Deep Learning, the algorithms that provide a solution to this problem have benefited from the representational power of deep models. This paper provides a comprehensive survey on works that employ Deep Learning models to solve the task of MOT on single-camera videos. Four main steps in MOT algorithms are identified, and an in-depth review of how Deep Learning was employed in each one of these stages is presented. A complete experimental comparison of the presented works on the three MOTChallenge datasets is also provided, identifying a number of similarities among the top-performing methods and presenting some possible future research directions.

Social Media has influenced the way people socially connect, interact and opinionize. The growth in technology has enhanced communication and dissemination of information. Unfortunately,many terror groups like jihadist communities have started consolidating a virtual community online for various purposes such as recruitment, online donations, targeting youth online and spread of extremist ideologies. Everyday a large number of articles, tweets, posts, posters, blogs, comments, views and news are posted online without a check which in turn imposes a threat to the security of any nation. However, different agencies are working on getting down this radical content from various online social media platforms. The aim of our paper is to utilise deep learning algorithm in detection of radicalization contrary to the existing works based on machine learning algorithms. An LSTM based feed forward neural network is employed to detect radical content. We collected total 61601 records from various online sources constituting news, articles and blogs. These records are annotated by domain experts into three categories: Radical(R), Non-Radical (NR) and Irrelevant(I) which are further applied to LSTM based network to classify radical content. A precision of 85.9% has been achieved with the proposed approach

In order to improve mobile data transparency, a number of network-based approaches have been proposed to inspect packets generated by mobile devices and detect personally identifiable information (PII), ad requests, or other activities. State-of-the-art approaches train classifiers based on features extracted from HTTP packets. So far, these classifiers have only been trained in a centralized way, where mobile users label and upload their packet logs to a central server, which then trains a global classifier and shares it with the users to apply on their devices. However, packet logs used as training data may contain sensitive information that users may not want to share/upload. In this paper, we apply, for the first time, a Federated Learning approach to mobile packet classification, which allows mobile devices to collaborate and train a global model, without sharing raw training data. Methodological challenges we address in this context include: model and feature selection, and tuning the Federated Learning parameters. We apply our framework to two different packet classification tasks ( i.e., to predict PII exposure or ad requests in HTTP packets) and we demonstrate its effectiveness in terms of classification performance, communication and computation cost, using three real-world datasets.

Climate has been an important factor in shaping the distribution and incidence of dengue cases in tropical and subtropical countries. In Costa Rica, a tropical country with distinctive micro-climates, dengue has been endemic since its introduction in 1993, inflicting substantial economic, social, and public health repercussions. Using the number of dengue reported cases and climate data from 2007-2017, we fitted a prediction model applying a Generalized Additive Model (GAM) and Random Forest (RF) approach, which allowed us to retrospectively predict dengue occurrence in five climatological diverse municipalities around the country.

Amyotrophic Lateral Sclerosis (ALS) is a neurodegenerative disease characterized by a rapid motor decline, leading to respiratory failure and subsequently to death. In this context, researchers have sought for models to automatically predict disease progression to assisted ventilation in ALS patients. However, the clinical translation of such models is limited by the lack of insight 1) on the risk of error for predictions at patient-level, and 2) on the most adequate time to administer the non-invasive ventilation. To address these issues, we combine Conformal Prediction (a machine learning framework that complements predictions with confidence measures) and a mixture experts into a prognostic model which not only predicts whether an ALS patient will suffer from respiratory insufficiency but also the most likely time window of occurrence, at a given reliability level. Promising results were obtained, with near 80% of predictions being correctly identified.

Medical Imaging with Deep Learning 2019 MIDL 2019 - Extended Abstract Track Screening Mammogram Classification with Prior Exams Jungkyu Park 1, Jason Phang 1, Yiqiu Shen 1, Nan Wu 1, S. Gene Kim 2, Linda Moy 2, Kyunghyun Cho 1, Krzysztof J. Geras 2, 1 1 Center for Data Science, New York University 2 Department of Radiology, New York University School of Medicine 1. Introduction Screening mammography had been shown to significantly reduce the mortality rate for breast cancer (Kopans, 2002; Duffy et al., 2002a,b), the second leading cause of cancer-related deaths among women in the United States. However, there is a high rate of false positive recalls and biopsies associated with breast cancer screening. Among the 10-15% of women asked for recall, only 10-20% within that subset are recommended for biopsy. Among those biopsies, only 20-40% are diagnosed with cancer (Kopans, 2015). Given the success of deep learning in computer vision, many deep neural network models have been applied to breast cancer screening (Ribli et al., 2018; Lotter et al., 2017; Geras et al., 2017; Wu et al., 2018, 2019a).

Large multi-tenant production clusters often have to handle a variety of jobs and applications with a variety of complex resource usage characteristics. It is non-trivial and non-optimal to manually create placement rules for scheduling that would decide which applications should co-locate. In this paper, we present DeepPlace, a scheduler that learns to exploits various temporal resource usage patterns of applications using Deep Reinforcement Learning (Deep RL) to reduce resource competition across jobs running in the same machine while at the same time optimizing for overall cluster utilization.