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Optimised Convolutional Neural Networks for Heart Rate Estimation and Human Activity Recognition in Wrist Worn Sensing Applications
Brophy, Eoin, Muehlhausen, Willie, Smeaton, Alan F., Ward, Tomas E.
Wrist-worn smart devices are providing increased insights into human health, behaviour and performance through sophisticated analytics. However, battery life, device cost and sensor performance in the face of movement-related artefact present challenges which must be further addressed to see effective applications and wider adoption through commoditisation of the technology. We address these challenges by demonstrating, through using a simple optical measurement, photoplethysmography (PPG) used conventionally for heart rate detection in wrist-worn sensors, that we can provide improved heart rate and human activity recognition (HAR) simultaneously at low sample rates, without an inertial measurement unit. This simplifies hardware design and reduces costs and power budgets. We apply two deep learning pipelines, one for human activity recognition and one for heart rate estimation. HAR is achieved through the application of a visual classification approach, capable of robust performance at low sample rates. Here, transfer learning is leveraged to retrain a convolutional neural network (CNN) to distinguish characteristics of the PPG during different human activities. For heart rate estimation we use a CNN adopted for regression which maps noisy optical signals to heart rate estimates. In both cases, comparisons are made with leading conventional approaches. Our results demonstrate a low sampling frequency can achieve good performance without significant degradation of accuracy. 5 Hz and 10 Hz were shown to have 80.2% and 83.0% classification accuracy for HAR respectively. These same sampling frequencies also yielded a robust heart rate estimation which was comparative with that achieved at the more energy-intensive rate of 256 Hz.
Exploration in Action Space
Vemula, Anirudh, Sun, Wen, Bagnell, J. Andrew
Parameter space exploration methods with black-box optimization have recently been shown to outperform state-of-the-art approaches in continuous control reinforcement learning domains. In this paper, we examine reasons why these methods work better and the situations in which they are worse than traditional action space exploration methods. Through a simple theoretical analysis, we show that when the parametric complexity required to solve the reinforcement learning problem is greater than the product of action space dimensionality and horizon length, exploration in action space is preferred. This is also shown empirically by comparing simple exploration methods on several toy problems.
Gossip and Attend: Context-Sensitive Graph Representation Learning
Kefato, Zekarias T., Girdzijauskas, Sarunas
Graph representation learning (GRL) is a powerful technique for learning low-dimensional vector representation of high-dimensional and often sparse graphs. Most studies explore the structure and metadata associated with the graph using random walks and employ an unsupervised or semi-supervised learning schemes. Learning in these methods is context-free, resulting in only a single representation per node. Recently studies have argued on the adequacy of a single representation and proposed context-sensitive approaches, which are capable of extracting multiple node representations for different contexts. This proved to be highly effective in applications such as link prediction and ranking. However, most of these methods rely on additional textual features that require complex and expensive RNNs or CNNs to capture high-level features or rely on a community detection algorithm to identify multiple contexts of a node. In this study we show that in-order to extract high-quality context-sensitive node representations it is not needed to rely on supplementary node features, nor to employ computationally heavy and complex models. We propose GOAT, a context-sensitive algorithm inspired by gossip communication and a mutual attention mechanism simply over the structure of the graph. We show the efficacy of GOAT using 6 real-world datasets on link prediction and node clustering tasks and compare it against 12 popular and state-of-the-art (SOTA) baselines. GOAT consistently outperforms them and achieves up to 12% and 19% gain over the best performing methods on link prediction and clustering tasks, respectively.
Adversarial Attacks on Multivariate Time Series
Harford, Samuel, Karim, Fazle, Darabi, Houshang
Classification models for the multivariate time series have gained significant importance in the research community, but not much research has been done on generating adversarial samples for these models. Such samples of adversaries could become a security concern. In this paper, we propose transforming the existing adversarial transformation network (ATN) on a distilled model to attack various multivariate time series classification models. The proposed attack on the classification model utilizes a distilled model as a surrogate that mimics the behavior of the attacked classical multivariate time series classification models. The proposed methodology is tested onto 1-Nearest Neighbor Dynamic Time Warping (1-NN DTW) and a Fully Convolutional Network (FCN), all of which are trained on 18 University of East Anglia (UEA) and University of California Riverside (UCR) datasets. We show both models were susceptible to attacks on all 18 datasets. To the best of our knowledge, adversarial attacks have only been conducted in the domain of univariate time series and have not been conducted on multivariate time series. such an attack on time series classification models has never been done before. Additionally, we recommend future researchers that develop time series classification models to incorporating adversarial data samples into their training data sets to improve resilience on adversarial samples and to consider model robustness as an evaluative metric.
Detection of FLOSS version release events from Stack Overflow message data
Sokolovsky, A., Gross, T., Bacardit, J.
Topic Detection and Tracking (TDT) is a very active research question within the area of text mining, generally applied to news feeds and Twitter datasets, where topics and events are detected. The notion of "event" is broad, but typically it applies to occurrences that can be detected from a single post or a message. Little attention has been drawn to what we call "micro-events", which, due to their nature, cannot be detected from a single piece of textual information. The study investigates micro-event detection on textual data using a sample of messages from the Stack Overflow Q&A platform in order to detect Free/Libre Open Source Software (FLOSS) version releases. Micro-events are detected using logistic regression models with step-wise forward regression feature selection from a set of LDA topics and sentiment analysis features. We perform a detailed statistical analysis of the models, including influential cases, variance inflation factors, validation of the linearity assumption, pseudo R squared measures and no-information rate. Finally, in order to understand the detection limits and improve the performance of the estimators, we suggest a method for generating micro-event synthetic datasets and use them identify the micro-event detectability thresholds.
Inference with Aggregate Data: An Optimal Transport Approach
Singh, Rahul, Haasler, Isabel, Zhang, Qinsheng, Karlsson, Johan, Chen, Yongxin
We consider inference problems over probabilistic graphical models with aggregate data. In particular, we propose a new efficient belief propagation type algorithm over tree-structured graphs with polynomial computational complexity as well as a global convergence guarantee. This is in contrast to previous methods that either exhibit prohibitive complexity as the population grows or do not guarantee convergence. Our method is based on optimal transport, or more specifically, multi-marginal optimal transport theory. In particular, the inference problem with aggregate observations we consider in this paper can be seen as a structured multi-marginal optimal transport problem, where the cost function decomposes according to the underlying graph. Consequently, the celebrated Sinkhorn algorithm for multi-marginal optimal transport can be leveraged, together with the standard belief propagation algorithm to establish an efficient inference scheme. We demonstrate the performance of our algorithm on applications such as inferring population flow from aggregate observations.
Flows for simultaneous manifold learning and density estimation
Brehmer, Johann, Cranmer, Kyle
We introduce manifold-modeling flows (MFMFs), a new class of generative models that simultaneously learn the data manifold as well as a tractable probability density on that manifold. Combining aspects of normalizing flows, GANs, autoencoders, and energy-based models, they have the potential to represent data sets with a manifold structure more faithfully and provide handles on dimensionality reduction, denoising, and out-of-distribution detection. We argue why such models should not be trained by maximum likelihood alone and present a new training algorithm that separates manifold and density updates. With two pedagogical examples we demonstrate how manifold-modeling flows let us learn the data manifold and allow for better inference than standard flows in the ambient data space.
Information-Theoretic Lower Bounds for Zero-Order Stochastic Gradient Estimation
Alabdulkareem, Abdulrahman, Honorio, Jean
In this paper we analyze the necessary number of samples to estimate the gradient of any multidimensional smooth (possibly non-convex) function in a zero-order stochastic oracle model. In this model, an estimator has access to noisy values of the function, in order to produce the estimate of the gradient. We also provide an analysis on the sufficient number of samples for the finite difference method, a classical technique in numerical linear algebra. For $T$ samples and $d$ dimensions, our information-theoretic lower bound is $\Omega(\sqrt{d/T})$. We show that the finite difference method has rate $O(d^{4/3}/\sqrt{T})$ for functions with zero third and higher order derivatives. Thus, the finite difference method is not minimax optimal, and therefore there is space for the development of better gradient estimation methods.
Lesion Conditional Image Generation for Improved Segmentation of Intracranial Hemorrhage from CT Images
Data augmentation can effectively resolve a scarcity of images when training machine-learning algorithms. It can make them more robust to unseen images. We present a lesion conditional Generative Adversarial Network LcGAN to generate synthetic Computed Tomography (CT) images for data augmentation. A lesion conditional image (segmented mask) is an input to both the generator and the discriminator of the LcGAN during training. The trained model generates contextual CT images based on input masks. We quantify the quality of the images by using a fully convolutional network (FCN) score and blurriness. We also train another classification network to select better synthetic images. These synthetic CT images are then augmented to our hemorrhagic lesion segmentation network. By applying this augmentation method on 2.5%, 10% and 25% of original data, segmentation improved by 12.8%, 6% and 1.6% respectively.
Dataless Model Selection with the Deep Frame Potential
Choosing a deep neural network architecture is a fundamental problem in applications that require balancing performance and parameter efficiency. Standard approaches rely on ad-hoc engineering or computationally expensive validation on a specific dataset. We instead attempt to quantify networks by their intrinsic capacity for unique and robust representations, enabling efficient architecture comparisons without requiring any data. Building upon theoretical connections between deep learning and sparse approximation, we propose the deep frame potential: a measure of coherence that is approximately related to representation stability but has minimizers that depend only on network structure. This provides a framework for jointly quantifying the contributions of architectural hyper-parameters such as depth, width, and skip connections. We validate its use as a criterion for model selection and demonstrate correlation with generalization error on a variety of common residual and densely connected network architectures.