Intratumor heterogeneity is often manifested by vascular compartments with distinct pharmacokinetics that cannot be resolved directly by in vivo dynamic imaging. We developed tissue-specific compartment modeling (TSCM), an unsupervised computational method of deconvolving dynamic imaging series from heterogeneous tumors that can improve vascular phenotyping in many biological contexts. Applying TSCM to dynamic contrast-enhanced MRI of breast cancers revealed characteristic intratumor vascular heterogeneity and therapeutic responses that were otherwise undetectable.

Recovering low-rank and sparse matrices from incomplete or corrupted observations is an important problem in machine learning, statistics, bioinformatics, computer vision, as well as signal and image processing. In theory, this problem can be solved by the natural convex joint/mixed relaxations (i.e., l_{1}-norm and trace norm) under certain conditions. However, all current provable algorithms suffer from superlinear per-iteration cost, which severely limits their applicability to large-scale problems. In this paper, we propose a scalable, provable structured low-rank matrix factorization method to recover low-rank and sparse matrices from missing and grossly corrupted data, i.e., robust matrix completion (RMC) problems, or incomplete and grossly corrupted measurements, i.e., compressive principal component pursuit (CPCP) problems. Specifically, we first present two small-scale matrix trace norm regularized bilinear structured factorization models for RMC and CPCP problems, in which repetitively calculating SVD of a large-scale matrix is replaced by updating two much smaller factor matrices. Then, we apply the alternating direction method of multipliers (ADMM) to efficiently solve the RMC problems. Finally, we provide the convergence analysis of our algorithm, and extend it to address general CPCP problems. Experimental results verified both the efficiency and effectiveness of our method compared with the state-of-the-art methods.

Recently, there has been a burst in the number of research projects on human computation via crowdsourcing. Multiple choice (or labeling) questions could be referred to as a common type of problem which is solved by this approach. As an application, crowd labeling is applied to find true labels for large machine learning datasets. Since crowds are not necessarily experts, the labels they provide are rather noisy and erroneous. This challenge is usually resolved by collecting multiple labels for each sample, and then aggregating them to estimate the true label. Although the mechanism leads to high-quality labels, it is not actually cost-effective. As a result, efforts are currently made to maximize the accuracy in estimating true labels, while fixing the number of acquired labels. This paper surveys methods to aggregate redundant crowd labels in order to estimate unknown true labels. It presents a unified statistical latent model where the differences among popular methods in the field correspond to different choices for the parameters of the model. Afterwards, algorithms to make inference on these models will be surveyed. Moreover, adaptive methods which iteratively collect labels based on the previously collected labels and estimated models will be discussed. In addition, this paper compares the distinguished methods, and provides guidelines for future work required to address the current open issues.

This paper aims at constructing a good graph for discovering intrinsic data structures in a semi-supervised learning setting. Firstly, we propose to build a non-negative low-rank and sparse (referred to as NNLRS) graph for the given data representation. Specifically, the weights of edges in the graph are obtained by seeking a nonnegative low-rank and sparse matrix that represents each data sample as a linear combination of others. The so-obtained NNLRS-graph can capture both the global mixture of subspaces structure (by the low rankness) and the locally linear structure (by the sparseness) of the data, hence is both generative and discriminative. Secondly, as good features are extremely important for constructing a good graph, we propose to learn the data embedding matrix and construct the graph jointly within one framework, which is termed as NNLRS with embedded features (referred to as NNLRS-EF). Extensive experiments on three publicly available datasets demonstrate that the proposed method outperforms the state-of-the-art graph construction method by a large margin for both semi-supervised classification and discriminative analysis, which verifies the effectiveness of our proposed method.

We study inference and learning based on a sparse coding model with `spike-and-slab' prior. As in standard sparse coding, the model used assumes independent latent sources that linearly combine to generate data points. However, instead of using a standard sparse prior such as a Laplace distribution, we study the application of a more flexible `spike-and-slab' distribution which models the absence or presence of a source's contribution independently of its strength if it contributes. We investigate two approaches to optimize the parameters of spike-and-slab sparse coding: a novel truncated EM approach and, for comparison, an approach based on standard factored variational distributions. The truncated approach can be regarded as a variational approach with truncated posteriors as variational distributions. In applications to source separation we find that both approaches improve the state-of-the-art in a number of standard benchmarks, which argues for the use of `spike-and-slab' priors for the corresponding data domains. Furthermore, we find that the truncated EM approach improves on the standard factored approach in source separation tasks$-$which hints to biases introduced by assuming posterior independence in the factored variational approach. Likewise, on a standard benchmark for image denoising, we find that the truncated EM approach improves on the factored variational approach. While the performance of the factored approach saturates with increasing numbers of hidden dimensions, the performance of the truncated approach improves the state-of-the-art for higher noise levels.

In this paper, we propose a novel neural network model called RNN Encoder-Decoder that consists of two recurrent neural networks (RNN). One RNN encodes a sequence of symbols into a fixed-length vector representation, and the other decodes the representation into another sequence of symbols. The encoder and decoder of the proposed model are jointly trained to maximize the conditional probability of a target sequence given a source sequence. The performance of a statistical machine translation system is empirically found to improve by using the conditional probabilities of phrase pairs computed by the RNN Encoder-Decoder as an additional feature in the existing log-linear model. Qualitatively, we show that the proposed model learns a semantically and syntactically meaningful representation of linguistic phrases.

Map matching of the GPS trajectory serves the purpose of recovering the original route on a road network from a sequence of noisy GPS observations. It is a fundamental technique to many Location Based Services. However, map matching of a low sampling rate on urban road network is still a challenging task. In this paper, the characteristics of Conditional Random Fields with regard to inducing many contextual features and feature selection are explored for the map matching of the GPS trajectories at a low sampling rate. Experiments on a taxi trajectory dataset show that our method may achieve competitive results along with the success of reducing model complexity for computation-limited applications.

This paper considers networks where relationships between nodes are represented by directed dissimilarities. The goal is to study methods for the determination of hierarchical clusters, i.e., a family of nested partitions indexed by a connectivity parameter, induced by the given dissimilarity structures. Our construction of hierarchical clustering methods is based on defining admissible methods to be those methods that abide by the axioms of value - nodes in a network with two nodes are clustered together at the maximum of the two dissimilarities between them - and transformation - when dissimilarities are reduced, the network may become more clustered but not less. Several admissible methods are constructed and two particular methods, termed reciprocal and nonreciprocal clustering, are shown to provide upper and lower bounds in the space of admissible methods. Alternative clustering methodologies and axioms are further considered. Allowing the outcome of hierarchical clustering to be asymmetric, so that it matches the asymmetry of the original data, leads to the inception of quasi-clustering methods. The existence of a unique quasi-clustering method is shown. Allowing clustering in a two-node network to proceed at the minimum of the two dissimilarities generates an alternative axiomatic construction. There is a unique clustering method in this case too. The paper also develops algorithms for the computation of hierarchical clusters using matrix powers on a min-max dioid algebra and studies the stability of the methods proposed. We proved that most of the methods introduced in this paper are such that similar networks yield similar hierarchical clustering results. Algorithms are exemplified through their application to networks describing internal migration within states of the United States (U.S.) and the interrelation between sectors of the U.S. economy.

The support vector machine (SVM) is one of the most successful learning methods for solving classification problems. Despite its popularity, SVM has a serious drawback, that is sensitivity to outliers in training samples. The penalty on misclassification is defined by a convex loss called the hinge loss, and the unboundedness of the convex loss causes the sensitivity to outliers. To deal with outliers, robust variants of SVM have been proposed, such as the robust outlier detection algorithm and an SVM with a bounded loss called the ramp loss. In this paper, we propose a robust variant of SVM and investigate its robustness in terms of the breakdown point. The breakdown point is a robustness measure that is the largest amount of contamination such that the estimated classifier still gives information about the non-contaminated data. The main contribution of this paper is to show an exact evaluation of the breakdown point for the robust SVM. For learning parameters such as the regularization parameter in our algorithm, we derive a simple formula that guarantees the robustness of the classifier. When the learning parameters are determined with a grid search using cross validation, our formula works to reduce the number of candidate search points. The robustness of the proposed method is confirmed in numerical experiments. We show that the statistical properties of the robust SVM are well explained by a theoretical analysis of the breakdown point.

Map matching of GPS trajectories from a sequence of noisy observations serves the purpose of recovering the original routes in a road network. In this work in progress, we attempt to share our experience of feature construction in a spatial database by reporting our ongoing experiment of feature extrac-tion in Conditional Random Fields (CRFs) for map matching. Our preliminary results are obtained from real-world taxi GPS trajectories.