This comment reexamines Simard et al.'s work in [D. Simard, L. Nadeau, H. Kroger, Phys. Lett. A 336 (2005) 8-15]. We found that Simard et al. calculated mistakenly the local connectivity lengths Dlocal of networks. The right results of Dlocal are presented and the supervised learning performance of feedforward neural networks (FNNs) with different rewirings are re-investigated in this comment. This comment discredits Simard et al's work by two conclusions: 1) Rewiring connections of FNNs cannot generate networks with small-world connectivity; 2) For different training sets, there do not exist networks with a certain number of rewirings generating reduced learning errors than networks with other numbers of rewiring.

The syntactic topic model (STM) is a Bayesian nonparametric model of language that discovers latent distributions of words (topics) that are both semantically and syntactically coherent. The STM models dependency parsed corpora where sentences are grouped into documents. It assumes that each word is drawn from a latent topic chosen by combining document-level features and the local syntactic context. Each document has a distribution over latent topics, as in topic models, which provides the semantic consistency. Each element in the dependency parse tree also has a distribution over the topics of its children, as in latent-state syntax models, which provides the syntactic consistency. These distributions are convolved so that the topic of each word is likely under both its document and syntactic context. We derive a fast posterior inference algorithm based on variational methods. We report qualitative and quantitative studies on both synthetic data and hand-parsed documents. We show that the STM is a more predictive model of language than current models based only on syntax or only on topics.

The methodology of Bayesian Model Averaging (BMA) is applied for assessment of newborn brain maturity from sleep EEG. In theory this methodology provides the most accurate assessments of uncertainty in decisions. However, the existing BMA techniques have been shown providing biased assessments in the absence of some prior information enabling to explore model parameter space in details within a reasonable time. The lack in details leads to disproportional sampling from the posterior distribution. In case of the EEG assessment of brain maturity, BMA results can be biased because of the absence of information about EEG feature importance. In this paper we explore how the posterior information about EEG features can be used in order to reduce a negative impact of disproportional sampling on BMA performance. We use EEG data recorded from sleeping newborns to test the efficiency of the proposed BMA technique.

We extend the well-known BFGS quasi-Newton method and its memory-limited variant LBFGS to the optimization of nonsmooth convex objectives. This is done in a rigorous fashion by generalizing three components of BFGS to subdifferentials: the local quadratic model, the identification of a descent direction, and the Wolfe line search conditions. We prove that under some technical conditions, the resulting subBFGS algorithm is globally convergent in objective function value. We apply its memory-limited variant (subLBFGS) to L_2-regularized risk minimization with the binary hinge loss. To extend our algorithm to the multiclass and multilabel settings, we develop a new, efficient, exact line search algorithm. We prove its worst-case time complexity bounds, and show that our line search can also be used to extend a recently developed bundle method to the multiclass and multilabel settings. We also apply the direction-finding component of our algorithm to L_1-regularized risk minimization with logistic loss. In all these contexts our methods perform comparable to or better than specialized state-of-the-art solvers on a number of publicly available datasets. An open source implementation of our algorithms is freely available.

We describe a variant of resolution rule of proof and show that it is complete for stable semantics of logic programs. We show applications of this result.

In query learning, the goal is to identify an unknown object while minimizing the number of "yes" or "no" questions (queries) posed about that object. A well-studied algorithm for query learning is known as generalized binary search (GBS). We show that GBS is a greedy algorithm to optimize the expected number of queries needed to identify the unknown object. We also generalize GBS in two ways. First, we consider the case where the cost of querying grows exponentially in the number of queries and the goal is to minimize the expected exponential cost. Then, we consider the case where the objects are partitioned into groups, and the objective is to identify only the group to which the object belongs. We derive algorithms to address these issues in a common, information-theoretic framework. In particular, we present an exact formula for the objective function in each case involving Shannon or Renyi entropy, and develop a greedy algorithm for minimizing it. Our algorithms are demonstrated on two applications of query learning, active learning and emergency response.

We propose a new approach to the analysis of Loopy Belief Propagation (LBP) by establishing a formula that connects the Hessian of the Bethe free energy with the edge zeta function. The formula has a number of theoretical implications on LBP. It is applied to give a sufficient condition that the Hessian of the Bethe free energy is positive definite, which shows non-convexity for graphs with multiple cycles. The formula clarifies the relation between the local stability of a fixed point of LBP and local minima of the Bethe free energy. We also propose a new approach to the uniqueness of LBP fixed point, and show various conditions of uniqueness.

An important challenge in constraint programming is to rewrite constraint models into executable programs calculat- ing the solutions. This phase of constraint processing may require translations between constraint programming lan- guages, transformations of constraint representations, model optimizations, and tuning of solving strategies. In this paper, we introduce a pivot metamodel describing the common fea- tures of constraint models including different kinds of con- straints, statements like conditionals and loops, and other first-class elements like object classes and predicates. This metamodel is general enough to cope with the constructions of many languages, from object-oriented modeling languages to logic languages, but it is independent from them. The rewriting operations manipulate metamodel instances apart from languages. As a consequence, the rewriting operations apply whatever languages are selected and they are able to manage model semantic information. A bridge is created between the metamodel space and languages using parsing techniques. Tools from the software engineering world can be useful to implement this framework.

Similarity networks are important abstractions in many information management applications such as recommender systems, corpora analysis, and medical informatics. For instance, by inducing similarity networks between movies rated similarly by users, or between documents containing common terms, and or between clinical trials involving the same themes, we can aim to find the global structure of connectivities underlying the data, and use the network as a basis to make connections between seemingly disparate entities. In the above applications, composing similarities between objects of interest finds uses in serendipitous recommendation, in storytelling, and in clinical diagnosis, respectively. We present an algorithmic framework for traversing similarity paths using the notion of `hammock' paths which are generalization of traditional paths. Our framework is exploratory in nature so that, given starting and ending objects of interest, it explores candidate objects for path following, and heuristics to admissibly estimate the potential for paths to lead to a desired destination. We present three diverse applications: exploring movie similarities in the Netflix dataset, exploring abstract similarities across the PubMed corpus, and exploring description similarities in a database of clinical trials. Experimental results demonstrate the potential of our approach for unstructured knowledge discovery in similarity networks.

Recently, new approaches to adaptive control have sought to reformulate the problem as a minimization of a relative entropy criterion to obtain tractable solutions. In particular, it has been shown that minimizing the expected deviation from the causal input-output dependencies of the true plant leads to a new promising stochastic control rule called the Bayesian control rule. This work proves the convergence of the Bayesian control rule under two sufficient assumptions: boundedness, which is an ergodicity condition; and consistency, which is an instantiation of the sure-thing principle.