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FinerMetagenomicReconstruction viaBiodiversityOptimization
In previous work [12, 13], a method was introduced that leverages compressive sensing techniques tofind thefewest taxa thatfitsthefrequencyofshort sequences ofnucleotides (i.e., k-mers) in a given sample. Consider, for instance, an environment/sample made of s bacterial species but where two of them are almost identical: one would wish to say that the concentration vector is almost(s 1)-sparse rather thans-sparse!
A Training Regime
For the Spectral Mixture Kernel, we use 4 mixtures. The CNF component for our model was inspired by FFJORD. For NGGP, we use the same CNF component architecture as in for the sines dataset. Adding noise allows for better performance when learning with the CNF component. We also use the same CNF component architecture as in the sines dataset. For this dataset, we tested NGGP and DKT models with RBF and Spectral kernels only.