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Structure-Preserving Multi-View Embedding Using Gromov-Wasserstein Optimal Transport

arXiv.org Machine Learning

Multi-view data analysis seeks to integrate multiple representations of the same samples in order to recover a coherent low-dimensional structure. Classical approaches often rely on feature concatenation or explicit alignment assumptions, which become restrictive under heterogeneous geometries or nonlinear distortions. In this work, we propose two geometry-aware multi-view embedding strategies grounded in Gromov-Wasserstein (GW) optimal transport. The first, termed Mean-GWMDS, aggregates view-specific relational information by averaging distance matrices and applying GW-based multidimensional scaling to obtain a representative embedding. The second strategy, referred to as Multi-GWMDS, adopts a selection-based paradigm in which multiple geometry-consistent candidate embeddings are generated via GW-based alignment and a representative embedding is selected. Experiments on synthetic manifolds and real-world datasets show that the proposed methods effectively preserve intrinsic relational structure across views. These results highlight GW-based approaches as a flexible and principled framework for multi-view representation learning.


Inversion-Free Natural Gradient Descent on Riemannian Manifolds

arXiv.org Machine Learning

The natural gradient method is widely used in statistical optimization, but its standard formulation assumes a Euclidean parameter space. This paper proposes an inversion-free stochastic natural gradient method for probability distributions whose parameters lie on a Riemannian manifold. The manifold setting offers several advantages: one can implicitly enforce parameter constraints such as positive definiteness and orthogonality, ensure parameters are identifiable, or guarantee regularity properties of the objective like geodesic convexity. Building on an intrinsic formulation of the Fisher information matrix (FIM) on a manifold, our method maintains an online approximation of the inverse FIM, which is efficiently updated at quadratic cost using score vectors sampled at successive iterates. In the Riemannian setting, these score vectors belong to different tangent spaces and must be combined using transport operations. We prove almost-sure convergence rates of $O(\log{s}/s^α)$ for the squared distance to the minimizer when the step size exponent $α>2/3$. We also establish almost-sure rates for the approximate FIM, which now accumulates transport-based errors. A limited-memory variant of the algorithm with sub-quadratic storage complexity is proposed. Finally, we demonstrate the effectiveness of our method relative to its Euclidean counterparts on variational Bayes with Gaussian approximations and normalizing flows.


Do covariates explain why these groups differ? The choice of reference group can reverse conclusions in the Oaxaca-Blinder decomposition

arXiv.org Machine Learning

Scientists often want to explain why an outcome is different in two groups. For instance, differences in patient mortality rates across two hospitals could be due to differences in the patients themselves (covariates) or differences in medical care (outcomes given covariates). The Oaxaca--Blinder decomposition (OBD) is a standard tool to tease apart these factors. It is well known that the OBD requires choosing one of the groups as a reference, and the numerical answer can vary with the reference. To the best of our knowledge, there has not been a systematic investigation into whether the choice of OBD reference can yield different substantive conclusions and how common this issue is. In the present paper, we give existence proofs in real and simulated data that the OBD references can yield substantively different conclusions and that these differences are not entirely driven by model misspecification or small data. We prove that substantively different conclusions occur in up to half of the parameter space, but find these discrepancies rare in the real-data analyses we study. We explain this empirical rarity by examining how realistic data-generating processes can be biased towards parameters that do not change conclusions under the OBD.


Enhancing Online Support Group Formation Using Topic Modeling Techniques

arXiv.org Machine Learning

Online health communities (OHCs) are vital for fostering peer support and improving health outcomes. Support groups within these platforms can provide more personalized and cohesive peer support, yet traditional support group formation methods face challenges related to scalability, static categorization, and insufficient personalization. To overcome these limitations, we propose two novel machine learning models for automated support group formation: the Group specific Dirichlet Multinomial Regression (gDMR) and the Group specific Structured Topic Model (gSTM). These models integrate user generated textual content, demographic profiles, and interaction data represented through node embeddings derived from user networks to systematically automate personalized, semantically coherent support group formation. We evaluate the models on a large scale dataset from MedHelp, comprising over 2 million user posts. Both models substantially outperform baseline methods including LDA, DMR, and STM in predictive accuracy (held out log likelihood), semantic coherence (UMass metric), and internal group consistency. The gDMR model yields group covariates that facilitate practical implementation by leveraging relational patterns from network structures and demographic data. In contrast, gSTM emphasizes sparsity constraints to generate more distinct and thematically specific groups. Qualitative analysis further validates the alignment between model generated groups and manually coded themes, showing the practical relevance of the models in informing groups that address diverse health concerns such as chronic illness management, diagnostic uncertainty, and mental health. By reducing reliance on manual curation, these frameworks provide scalable solutions that enhance peer interactions within OHCs, with implications for patient engagement, community resilience, and health outcomes.


Topological Detection of Hopf Bifurcations via Persistent Homology: A Functional Criterion from Time Series

arXiv.org Machine Learning

We propose a topological framework for the detection of Hopf bifurcations directly from time series, based on persistent homology applied to phase space reconstructions via Takens embedding within the framework of Topological Data Analysis. The central idea is that changes in the dynamical regime are reflected in the emergence or disappearance of a dominant one-dimensional homological features in the reconstructed attractor. To quantify this behavior, we introduce a simple and interpretable scalar topological functional defined as the maximum persistence of homology classes in dimension one. This functional is used to construct a computable criterion for identifying critical parameters in families of dynamical systems without requiring knowledge of the underlying equations. The proposed approach is validated on representative systems of increasing complexity, showing consistent detection of the bifurcation point. The results support the interpretation of dynamical transitions as topological phase transitions and demonstrate the potential of topological data analysis as a model-free tool for the quantitative analysis of nonlinear time series.


Learning to Recorrupt: Noise Distribution Agnostic Self-Supervised Image Denoising

arXiv.org Machine Learning

Self-supervised image denoising methods have traditionally relied on either architectural constraints or specialized loss functions that require prior knowledge of the noise distribution to avoid the trivial identity mapping. Among these, approaches such as Noisier2Noise or Recorrupted2Recorrupted, create training pairs by adding synthetic noise to the noisy images. While effective, these recorruption-based approaches require precise knowledge of the noise distribution, which is often not available. We present Learning to Recorrupt (L2R), a noise distribution-agnostic denoising technique that eliminates the need for knowledge of the noise distribution. Our method introduces a learnable monotonic neural network that learns the recorruption process through a min-max saddle-point objective. The proposed method achieves state-of-the-art performance across unconventional and heavy-tailed noise distributions, such as log-gamma, Laplace, and spatially correlated noise, as well as signal-dependent noise models such as Poisson-Gaussian noise.


Benchmarking Tabular Foundation Models for Conditional Density Estimation in Regression

arXiv.org Machine Learning

Conditional density estimation (CDE) - recovering the full conditional distribution of a response given tabular covariates - is essential in settings with heteroscedasticity, multimodality, or asymmetric uncertainty. Recent tabular foundation models, such as TabPFN and TabICL, naturally produce predictive distributions, but their effectiveness as general-purpose CDE methods has not been systematically evaluated, unlike their performance for point prediction, which is well studied. We benchmark three tabular foundation model variants against a diverse set of parametric, tree-based, and neural CDE baselines on 39 real-world datasets, across training sizes from 50 to 20,000, using six metrics covering density accuracy, calibration, and computation time. Across all sample sizes, foundation models achieve the best CDE loss, log-likelihood, and CRPS on the large majority of datasets tested. Calibration is competitive at small sample sizes but, for some metrics and datasets, lags behind task-specific neural baselines at larger sample sizes, suggesting that post-hoc recalibration may be a valuable complement. In a photometric redshift case study using SDSS DR18, TabPFN exposed to 50,000 training galaxies outperforms all baselines trained on the full 500,000-galaxy dataset. Taken together, these results establish tabular foundation models as strong off-the-shelf conditional density estimators.


On the Expressive Power of Contextual Relations in Transformers

arXiv.org Machine Learning

Transformer architectures have achieved remarkable empirical success in modeling contextual relationships in natural language, yet a precise mathematical characterization of their expressive power remains incomplete. In this work, we introduce a measure-theoretic framework for contextual representations in which texts are modeled as probability measures over a semantic embedding space, and contextual relations between words, are represented as coupling measures between them. Within this setting, we introduce Sinkhorn Transformer, a transformer-like architecture. Our main result is a universal approximation theorem: any continuous coupling function between probability measures, that encodes the semantic relation coupling measure, can be uniformly approximated by a Sinkhorn Transformer with appropriate parameters.


Identifiable Deep Latent Variable Models for MNAR Data

arXiv.org Machine Learning

Missing data is a ubiquitous challenge in data analysis, often leading to biased and inaccurate results. Traditional imputation methods usually assume that the missingness mechanism is missing-at-random (MAR), where the missingness is independent of the missing values themselves. This assumption is frequently violated in real-world scenarios, prompted by recent advances in imputation methods using deep learning to address this challenge. However, these methods neglect the crucial issue of nonparametric identifiability in missing-not-at-random (MNAR) data, which can lead to biased and unreliable results. This paper seeks to bridge this gap by proposing a novel framework based on deep latent variable models for MNAR data. Building on the assumption of conditional no self-censoring given latent variables, we establish the identifiability of the data distribution. This crucial theoretical result guarantees the feasibility of our approach. To effectively estimate unknown parameters, we develop an efficient algorithm utilizing importance-weighted autoencoders. We demonstrate, both theoretically and empirically, that our estimation process accurately recovers the ground-truth joint distribution under specific regularity conditions. Extensive simulation studies and real-world data experiments showcase the advantages of our proposed method compared to various classical and state-of-the-art approaches to missing data imputation.


Minimax Generalized Cross-Entropy

arXiv.org Machine Learning

Loss functions play a central role in supervised classification. Cross-entropy (CE) is widely used, whereas the mean absolute error (MAE) loss can offer robustness but is difficult to optimize. Interpolating between the CE and MAE losses, generalized cross-entropy (GCE) has recently been introduced to provide a trade-off between optimization difficulty and robustness. Existing formulations of GCE result in a non-convex optimization over classification margins that is prone to underfitting, leading to poor performances with complex datasets. In this paper, we propose a minimax formulation of generalized cross-entropy (MGCE) that results in a convex optimization over classification margins. Moreover, we show that MGCEs can provide an upper bound on the classification error. The proposed bilevel convex optimization can be efficiently implemented using stochastic gradient computed via implicit differentiation. Using benchmark datasets, we show that MGCE achieves strong accuracy, faster convergence, and better calibration, especially in the presence of label noise.