LLMs are an integral part of retrieval-augmented generation (RAG) systems. While many studies focus on evaluating the quality of end-to-end RAG systems, there is a lack of research on understanding the appropriateness of an LLM for the RAG task. Thus, we introduce a new metric, Trust-Score, that provides a holistic evaluation of the trustworthiness of LLMs in an RAG framework. We show that various prompting methods, such as in-context learning, fail to adapt LLMs effectively to the RAG task. Thus, we propose Trust-Align, a framework to align LLMs for higher Trust-Score. LLaMA-3-8b, aligned with our method, significantly outperforms open-source LLMs of comparable sizes on ASQA (up 10.7), QAMPARI (up 29.2) and ELI5 (up 14.9). We release our code at: https://github.com/declare-lab/trust-align.

Large language models (LLMs) are being increasingly integrated into everyday products and services, such as coding tools and writing assistants. As these embedded AI applications are deployed globally, there is a growing concern that the AI models underlying these applications prioritize Western values. This paper investigates what happens when a Western-centric AI model provides writing suggestions to users from a different cultural background. We conducted a cross-cultural controlled experiment with 118 participants from India and the United States who completed culturally grounded writing tasks with and without AI suggestions. Our analysis reveals that AI provided greater efficiency gains for Americans compared to Indians. Moreover, AI suggestions led Indian participants to adopt Western writing styles, altering not just what is written but also how it is written. These findings show that Western-centric AI models homogenize writing toward Western norms, diminishing nuances that differentiate cultural expression.

Understanding neurological disorder is a fundamental problem in neuroscience, which often requires the analysis of brain networks derived from functional magnetic resonance imaging (fMRI) data. Despite the prevalence of Graph Neural Networks (GNNs) and Graph Transformers in various domains, applying them to brain networks faces challenges. Specifically, the datasets are severely impacted by the noises caused by distribution shifts across sub-populations and the neglect of node identities, both obstruct the identification of disease-specific patterns. To tackle these challenges, we propose Contrasformer, a novel contrastive brain network Transformer. It generates a prior-knowledge-enhanced contrast graph to address the distribution shifts across sub-populations by a two-stream attention mechanism. A cross attention with identity embedding highlights the identity of nodes, and three auxiliary losses ensure group consistency. Evaluated on 4 functional brain network datasets over 4 different diseases, Contrasformer outperforms the state-of-the-art methods for brain networks by achieving up to 10.8\% improvement in accuracy, which demonstrates its efficacy in neurological disorder identification. Case studies illustrate its interpretability, especially in the context of neuroscience. This paper provides a solution for analyzing brain networks, offering valuable insights into neurological disorders. Our code is available at \url{https://github.com/AngusMonroe/Contrasformer}.

This paper describes an efficient, open source PyTorch implementation of the Spectral Transform Unit. We investigate sequence prediction tasks over several modalities including language, robotics, and simulated dynamical systems. We find that for the same parameter count, the STU and its variants outperform the Transformer as well as other leading state space models across various modalities.

The subject of features normalization plays an important central role in data representation, characterization, visualization, analysis, comparison, classification, and modeling, as it can substantially influence and be influenced by all of these activities and respective aspects. The selection of an appropriate normalization method needs to take into account the type and characteristics of the involved features, the methods to be used subsequently for the just mentioned data processing, as well as the specific questions being considered. After briefly considering how normalization constitutes one of the many interrelated parts typically involved in data analysis and modeling, the present work addressed the important issue of feature normalization from the perspective of uniform and proportional (right skewed) features and comparison operations. More general right skewed features are also considered in an approximated manner. Several concepts, properties, and results are described and discussed, including the description of a duality relationship between uniform and proportional feature spaces and respective comparisons, specifying conditions for consistency between comparisons in each of the two domains. Two normalization possibilities based on non-centralized dispersion of features are also presented, and also described is a modified version of the Jaccard similarity index which incorporates intrinsically normalization. Preliminary experiments are presented in order to illustrate the developed concepts and methods.

Contextualized embeddings vary by context, even for the same token, and form a distribution in the embedding space. To analyze this distribution, we focus on the norm of the mean embedding and the variance of the embeddings. In this study, we first demonstrate that these values follow the well-known formula for variance in statistics and provide an efficient sequential computation method. Then, by observing embeddings from intermediate layers of several Transformer models, we found a strong trade-off relationship between the norm and the variance: as the mean embedding becomes closer to the origin, the variance increases. This trade-off is likely influenced by the layer normalization mechanism used in Transformer models. Furthermore, when the sets of token embeddings are treated as clusters, we show that the variance of the entire embedding set can theoretically be decomposed into the within-cluster variance and the between-cluster variance. We found experimentally that as the layers of Transformer models deepen, the embeddings move farther from the origin, the between-cluster variance relatively decreases, and the within-cluster variance relatively increases. These results are consistent with existing studies on the anisotropy of the embedding spaces across layers.

The growing demand for innovative research in the food industry is driving the adoption of robots in large-scale experimentation, as it offers increased precision, replicability, and efficiency in product manufacturing and evaluation. To this end, we introduce a robotic system designed to optimize food product quality, focusing on powdered cappuccino preparation as a case study. By leveraging optimization algorithms and computer vision, the robot explores the parameter space to identify the ideal conditions for producing a cappuccino with the best foam quality. The system also incorporates computer vision-driven feedback in a closed-loop control to further improve the beverage. Our findings demonstrate the effectiveness of robotic automation in achieving high repeatability and extensive parameter exploration, paving the way for more advanced and reliable food product development.

We developed a jitted compiler for training Artificial Neural Networks using C++, LLVM and Cuda. It features object-oriented characteristics, strong typing, parallel workers for data pre-processing, pythonic syntax for expressions, PyTorch like model declaration and Automatic Differentiation. We implement the mechanisms of cache and pooling in order to manage VRAM, cuBLAS for high performance matrix multiplication and cuDNN for convolutional layers. Our experiments with Residual Convolutional Neural Networks on ImageNet, we reach similar speed but degraded performance. Also, the GRU network experiments show similar accuracy, but our compiler have degraded speed in that task. However, our compiler demonstrates promising results at the CIFAR-10 benchmark, in which we reach the same performance and about the same speed as PyTorch. We make the code publicly available at: https://github.com/NoSavedDATA/NoSavedKaleidoscope

AI agents have the potential to aid users on a variety of consequential tasks, including conducting scientific research. To spur the development of useful agents, we need benchmarks that are challenging, but more crucially, directly correspond to real-world tasks of interest. This paper introduces such a benchmark, designed to measure the accuracy of AI agents in tackling a crucial yet surprisingly challenging aspect of scientific research: computational reproducibility. This task, fundamental to the scientific process, involves reproducing the results of a study using the provided code and data. We introduce CORE-Bench (Computational Reproducibility Agent Benchmark), a benchmark consisting of 270 tasks based on 90 scientific papers across three disciplines (computer science, social science, and medicine). Tasks in CORE-Bench consist of three difficulty levels and include both language-only and vision-language tasks. We provide an evaluation system to measure the accuracy of agents in a fast and parallelizable way, saving days of evaluation time for each run compared to a sequential implementation. We evaluated two baseline agents: the general-purpose AutoGPT and a task-specific agent called CORE-Agent. We tested both variants using two underlying language models: GPT-4o and GPT-4o-mini. The best agent achieved an accuracy of 21% on the hardest task, showing the vast scope for improvement in automating routine scientific tasks. Having agents that can reproduce existing work is a necessary step towards building agents that can conduct novel research and could verify and improve the performance of other research agents. We hope that CORE-Bench can improve the state of reproducibility and spur the development of future research agents.

Histopathology analysis is the gold standard for medical diagnosis. Accurate classification of whole slide images (WSIs) and region-of-interests (ROIs) localization can assist pathologists in diagnosis. The gigapixel resolution of WSI and the absence of fine-grained annotations make direct classification and analysis challenging. In weakly supervised learning, multiple instance learning (MIL) presents a promising approach for WSI classification. The prevailing strategy is to use attention mechanisms to measure instance importance for classification. However, attention mechanisms fail to capture inter-instance information, and self-attention causes quadratic computational complexity. To address these challenges, we propose AMD-MIL, an agent aggregator with a mask denoise mechanism. The agent token acts as an intermediate variable between the query and key for computing instance importance. Mask and denoising matrices, mapped from agents-aggregated value, dynamically mask low-contribution representations and eliminate noise. AMD-MIL achieves better attention allocation by adjusting feature representations, capturing micro-metastases in cancer, and improving interpretability. Extensive experiments on CAMELYON-16, CAMELYON-17, TCGA-KIDNEY, and TCGA-LUNG show AMD-MIL's superiority over state-of-the-art methods.