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Disease Outbreak Detection and Forecasting: A Review of Methods and Data Sources

arXiv.org Artificial Intelligence

Infectious diseases occur when pathogens from other individuals or animals infect a person, resulting in harm to both individuals and society as a whole. The outbreak of such diseases can pose a significant threat to human health. However, early detection and tracking of these outbreaks have the potential to reduce the mortality impact. To address these threats, public health authorities have endeavored to establish comprehensive mechanisms for collecting disease data. Many countries have implemented infectious disease surveillance systems, with the detection of epidemics being a primary objective. The clinical healthcare system, local/state health agencies, federal agencies, academic/professional groups, and collaborating governmental entities all play pivotal roles within this system. Moreover, nowadays, search engines and social media platforms can serve as valuable tools for monitoring disease trends. The Internet and social media have become significant platforms where users share information about their preferences and relationships. This real-time information can be harnessed to gauge the influence of ideas and societal opinions, making it highly useful across various domains and research areas, such as marketing campaigns, financial predictions, and public health, among others. This article provides a review of the existing standard methods developed by researchers for detecting outbreaks using time series data. These methods leverage various data sources, including conventional data sources and social media data or Internet data sources. The review particularly concentrates on works published within the timeframe of 2015 to 2022.


Rolling the DICE on Idiomaticity: How LLMs Fail to Grasp Context

arXiv.org Artificial Intelligence

Human processing of idioms relies on understanding the contextual sentences in which idioms occur, as well as language-intrinsic features such as frequency and speaker-intrinsic factors like familiarity. While LLMs have shown high performance on idiomaticity detection tasks, this success may be attributed to reasoning shortcuts in existing datasets. To this end, we construct a novel, controlled contrastive dataset designed to test whether LLMs can effectively use context to disambiguate idiomatic meaning. Additionally, we explore how collocational frequency and sentence probability influence model performance. Our findings reveal that LLMs often fail to resolve idiomaticity when it is required to attend to the surrounding context, and that models perform better on sentences that have higher likelihood. The collocational frequency of expressions also impacts performance. We make our code and dataset publicly available.


Benchmarking Large Language Models for Image Classification of Marine Mammals

arXiv.org Artificial Intelligence

As Artificial Intelligence (AI) has developed rapidly over the past few decades, the new generation of AI, Large Language Models (LLMs) trained on massive datasets, has achieved ground-breaking performance in many applications. Further progress has been made in multimodal LLMs, with many datasets created to evaluate LLMs with vision abilities. However, none of those datasets focuses solely on marine mammals, which are indispensable for ecological equilibrium. In this work, we build a benchmark dataset with 1,423 images of 65 kinds of marine mammals, where each animal is uniquely classified into different levels of class, ranging from species-level to medium-level to group-level. Moreover, we evaluate several approaches for classifying these marine mammals: (1) machine learning (ML) algorithms using embeddings provided by neural networks, (2) influential pre-trained neural networks, (3) zero-shot models: CLIP and LLMs, and (4) a novel LLM-based multi-agent system (MAS). The results demonstrate the strengths of traditional models and LLMs in different aspects, and the MAS can further improve the classification performance. The dataset is available on GitHub: https://github.com/yeyimilk/LLM-Vision-Marine-Animals.git.


Arithmetic Transformers Can Length-Generalize in Both Operand Length and Count

arXiv.org Artificial Intelligence

Transformers often struggle with length generalization, meaning they fail to generalize to sequences longer than those encountered during training. While arithmetic tasks are commonly used to study length generalization, certain tasks are considered notoriously difficult, e.g., multi-operand addition (requiring generalization over both the number of operands and their lengths) and multiplication (requiring generalization over both operand lengths). In this work, we achieve approximately 2-3x length generalization on both tasks, which is the first such achievement in arithmetic Transformers. We design task-specific scratchpads enabling the model to focus on a fixed number of tokens per each next-token prediction step, and apply multi-level versions of Position Coupling (Cho et al., 2024; McLeish et al., 2024) to let Transformers know the right position to attend to. On the theory side, we prove that a 1-layer Transformer using our method can solve multi-operand addition, up to operand length and operand count that are exponential in embedding dimension.


FAMOUS: Flexible Accelerator for the Attention Mechanism of Transformer on UltraScale+ FPGAs

arXiv.org Artificial Intelligence

Transformer neural networks (TNNs) are being applied across a widening range of application domains, including natural language processing (NLP), machine translation, and computer vision (CV). Their popularity is largely attributed to the exceptional performance of their multi-head self-attention blocks when analyzing sequential data and extracting features. To date, there are limited hardware accelerators tailored for this mechanism, which is the first step before designing an accelerator for a complete model. This paper proposes \textit{FAMOUS}, a flexible hardware accelerator for dense multi-head attention (MHA) computation of TNNs on field-programmable gate arrays (FPGAs). It is optimized for high utilization of processing elements and on-chip memories to improve parallelism and reduce latency. An efficient tiling of large matrices has been employed to distribute memory and computing resources across different modules on various FPGA platforms. The design is evaluated on Xilinx Alveo U55C and U200 data center cards containing Ultrascale+ FPGAs. Experimental results are presented that show that it can attain a maximum throughput, number of parallel attention heads, embedding dimension and tile size of 328 (giga operations/second (GOPS)), 8, 768 and 64 respectively on the U55C. Furthermore, it is 3.28$\times$ and 2.6$\times$ faster than the Intel Xeon Gold 5220R CPU and NVIDIA V100 GPU respectively. It is also 1.3$\times$ faster than the fastest state-of-the-art FPGA-based accelerator.


Teach Multimodal LLMs to Comprehend Electrocardiographic Images

arXiv.org Artificial Intelligence

The electrocardiogram (ECG) is an essential non-invasive diagnostic tool for assessing cardiac conditions. Existing automatic interpretation methods suffer from limited generalizability, focusing on a narrow range of cardiac conditions, and typically depend on raw physiological signals, which may not be readily available in resource-limited settings where only printed or digital ECG images are accessible. Recent advancements in multimodal large language models (MLLMs) present promising opportunities for addressing these challenges. However, the application of MLLMs to ECG image interpretation remains challenging due to the lack of instruction tuning datasets and well-established ECG image benchmarks for quantitative evaluation. To address these challenges, we introduce ECGInstruct, a comprehensive ECG image instruction tuning dataset of over one million samples, covering a wide range of ECG-related tasks from diverse data sources. Using ECGInstruct, we develop PULSE, an MLLM tailored for ECG image comprehension. In addition, we curate ECGBench, a new evaluation benchmark covering four key ECG image interpretation tasks across nine different datasets. Our experiments show that PULSE sets a new state-of-the-art, outperforming general MLLMs with an average accuracy improvement of 15% to 30%. This work highlights the potential of PULSE to enhance ECG interpretation in clinical practice.


Integer linear programming for unsupervised training set selection in molecular machine learning

arXiv.org Artificial Intelligence

Integer linear programming (ILP) is an elegant approach to solve linear optimization problems, naturally described using integer decision variables. Within the context of physics-inspired machine learning applied to chemistry, we demonstrate the relevance of an ILP formulation to select molecular training sets for predictions of size-extensive properties. We show that our algorithm outperforms existing unsupervised training set selection approaches, especially when predicting properties of molecules larger than those present in the training set. We argue that the reason for the improved performance is due to the selection that is based on the notion of local similarity (i.e., per-atom) and a unique ILP approach that finds optimal solutions efficiently. Altogether, this work provides a practical algorithm to improve the performance of physics-inspired machine learning models and offers insights into the conceptual differences with existing training set selection approaches.


Natural Language Processing for Human Resources: A Survey

arXiv.org Artificial Intelligence

The domain of human resources (HR) includes a broad spectrum of tasks related to natural language processing (NLP) techniques. Recent breakthroughs in NLP have generated significant interest in its industrial applications in this domain and potentially alleviate challenges such as the difficulty of resource acquisition and the complexity of problems. At the same time, the HR domain can also present unique challenges that drive state-of-the-art in NLP research. To support this, we provide NLP researchers and practitioners with an overview of key HR tasks from an NLP perspective, illustrating how specific sub-tasks (e.g., skill extraction) contribute to broader objectives (e.g., job matching). Through this survey, we identify opportunities in NLP for HR and suggest directions for future exploration.


PALMS: Plane-based Accessible Indoor Localization Using Mobile Smartphones

arXiv.org Artificial Intelligence

In this paper, we present PALMS, an innovative indoor global localization and relocalization system for mobile smartphones that utilizes publicly available floor plans. Unlike most vision-based methods that require constant visual input, our system adopts a dynamic form of localization that considers a single instantaneous observation and odometry data. The core contribution of this work is the introduction of a particle filter initialization method that leverages the Certainly Empty Space (CES) constraint along with principal orientation matching. This approach creates a spatial probability distribution of the device's location, significantly improving localization accuracy and reducing particle filter convergence time. Our experimental evaluations demonstrate that PALMS outperforms traditional methods with uniformly initialized particle filters, providing a more efficient and accessible approach to indoor wayfinding. By eliminating the need for prior environmental fingerprinting, PALMS provides a scalable and practical approach to indoor navigation.


Modelling Concurrent RTP Flows for End-to-end Predictions of QoS in Real Time Communications

arXiv.org Artificial Intelligence

The Real-time Transport Protocol (RTP)-based real-time communications (RTC) applications, exemplified by video conferencing, have experienced an unparalleled surge in popularity and development in recent years. In pursuit of optimizing their performance, the prediction of Quality of Service (QoS) metrics emerges as a pivotal endeavor, bolstering network monitoring and proactive solutions. However, contemporary approaches are confined to individual RTP flows and metrics, falling short in relationship capture and computational efficiency. To this end, we propose Packet-to-Prediction (P2P), a novel deep learning (DL) framework that hinges on raw packets to simultaneously process concurrent RTP flows and perform end-to-end prediction of multiple QoS metrics. Specifically, we implement a streamlined architecture, namely length-free Transformer with cross and neighbourhood attention, capable of handling an unlimited number of RTP flows, and employ a multi-task learning paradigm to forecast four key metrics in a single shot. Our work is based on extensive traffic collected during real video calls, and conclusively, P2P excels comparative models in both prediction performance and temporal efficiency.