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Automatic Tuberculosis and COVID-19 cough classification using deep learning

arXiv.org Artificial Intelligence

We present a deep learning based automatic cough classifier which can discriminate tuberculosis (TB) coughs from COVID-19 coughs and healthy coughs. Both TB and COVID-19 are respiratory diseases, contagious, have cough as a predominant symptom and claim thousands of lives each year. The cough audio recordings were collected at both indoor and outdoor settings and also uploaded using smartphones from subjects around the globe, thus containing various levels of noise. This cough data include 1.68 hours of TB coughs, 18.54 minutes of COVID-19 coughs and 1.69 hours of healthy coughs from 47 TB patients, 229 COVID-19 patients and 1498 healthy patients and were used to train and evaluate a CNN, LSTM and Resnet50. These three deep architectures were also pre-trained on 2.14 hours of sneeze, 2.91 hours of speech and 2.79 hours of noise for improved performance. The class-imbalance in our dataset was addressed by using SMOTE data balancing technique and using performance metrics such as F1-score and AUC. Our study shows that the highest F1-scores of 0.9259 and 0.8631 have been achieved from a pre-trained Resnet50 for two-class (TB vs COVID-19) and three-class (TB vs COVID-19 vs healthy) cough classification tasks, respectively. The application of deep transfer learning has improved the classifiers' performance and makes them more robust as they generalise better over the cross-validation folds. Their performances exceed the TB triage test requirements set by the world health organisation (WHO). The features producing the best performance contain higher order of MFCCs suggesting that the differences between TB and COVID-19 coughs are not perceivable by the human ear. This type of cough audio classification is non-contact, cost-effective and can easily be deployed on a smartphone, thus it can be an excellent tool for both TB and COVID-19 screening.


Free Energy Node Embedding via Generalized Skip-gram with Negative Sampling

arXiv.org Artificial Intelligence

A widely established set of unsupervised node embedding methods can be interpreted as consisting of two distinctive steps: i) the definition of a similarity matrix based on the graph of interest followed by ii) an explicit or implicit factorization of such matrix. Inspired by this viewpoint, we propose improvements in both steps of the framework. On the one hand, we propose to encode node similarities based on the free energy distance, which interpolates between the shortest path and the commute time distances, thus, providing an additional degree of flexibility. On the other hand, we propose a matrix factorization method based on a loss function that generalizes that of the skip-gram model with negative sampling to arbitrary similarity matrices. Compared with factorizations based on the widely used $\ell_2$ loss, the proposed method can better preserve node pairs associated with higher similarity scores. Moreover, it can be easily implemented using advanced automatic differentiation toolkits and computed efficiently by leveraging GPU resources. Node clustering, node classification, and link prediction experiments on real-world datasets demonstrate the effectiveness of incorporating free-energy-based similarities as well as the proposed matrix factorization compared with state-of-the-art alternatives.


MIntRec: A New Dataset for Multimodal Intent Recognition

arXiv.org Artificial Intelligence

Multimodal intent recognition is a significant task for understanding human language in real-world multimodal scenes. Most existing intent recognition methods have limitations in leveraging the multimodal information due to the restrictions of the benchmark datasets with only text information. This paper introduces a novel dataset for multimodal intent recognition (MIntRec) to address this issue. It formulates coarse-grained and fine-grained intent taxonomies based on the data collected from the TV series Superstore. The dataset consists of 2,224 high-quality samples with text, video, and audio modalities and has multimodal annotations among twenty intent categories. Furthermore, we provide annotated bounding boxes of speakers in each video segment and achieve an automatic process for speaker annotation. MIntRec is helpful for researchers to mine relationships between different modalities to enhance the capability of intent recognition. We extract features from each modality and model cross-modal interactions by adapting three powerful multimodal fusion methods to build baselines. Extensive experiments show that employing the non-verbal modalities achieves substantial improvements compared with the text-only modality, demonstrating the effectiveness of using multimodal information for intent recognition. The gap between the best-performing methods and humans indicates the challenge and importance of this task for the community. The full dataset and codes are available for use at https://github.com/thuiar/MIntRec.


Neural Networks for Local Search and Crossover in Vehicle Routing: A Possible Overkill?

arXiv.org Artificial Intelligence

Extensive research has been conducted, over recent years, on various ways of enhancing heuristic search for combinatorial optimization problems with machine learning algorithms. In this study, we investigate the use of predictions from graph neural networks (GNNs) in the form of heatmaps to improve the Hybrid Genetic Search (HGS), a state-of-the-art algorithm for the Capacitated Vehicle Routing Problem (CVRP). The crossover and local-search components of HGS are instrumental in finding improved solutions, yet these components essentially rely on simple greedy or random choices. It seems intuitive to attempt to incorporate additional knowledge at these levels. Throughout a vast experimental campaign on more than 10,000 problem instances, we show that exploiting more sophisticated strategies using measures of node relatedness (heatmaps, or simply distance) within these algorithmic components can significantly enhance performance. However, contrary to initial expectations, we also observed that heatmaps did not present significant advantages over simpler distance measures for these purposes. Therefore, we faced a common -- though rarely documented -- situation of overkill: GNNs can indeed improve performance on an important optimization task, but an ablation analysis demonstrated that simpler alternatives perform equally well.


Summarize, Outline, and Elaborate: Long-Text Generation via Hierarchical Supervision from Extractive Summaries

arXiv.org Artificial Intelligence

The difficulty of generating coherent long texts lies in the fact that existing models overwhelmingly focus on predicting local words, and cannot make high level plans on what to generate or capture the high-level discourse dependencies between chunks of texts. Inspired by human writing processes, where a list of bullet points or a catalog is first outlined, and then each bullet point is expanded to form the whole article, we propose {\it SOE}, a pipelined system that involves of summarizing, outlining and elaborating for long text generation: the model first outlines the summaries for different segments of long texts, and then elaborates on each bullet point to generate the corresponding segment. To avoid the labor-intensive process of summary soliciting, we propose the {\it reconstruction} strategy, which extracts segment summaries in an unsupervised manner by selecting its most informative part to reconstruct the segment. The proposed generation system comes with the following merits: (1) the summary provides high-level guidance for text generation and avoids the local minimum of individual word predictions; (2) the high-level discourse dependencies are captured in the conditional dependencies between summaries and are preserved during the summary expansion process and (3) additionally, we are able to consider significantly more contexts by representing contexts as concise summaries. Extensive experiments demonstrate that SOE produces long texts with significantly better quality, along with faster convergence speed.


BERT is to NLP what AlexNet is to CV: Can Pre-Trained Language Models Identify Analogies?

arXiv.org Artificial Intelligence

Analogies play a central role in human commonsense reasoning. The ability to recognize analogies such as "eye is to seeing what ear is to hearing", sometimes referred to as analogical proportions, shape how we structure knowledge and understand language. Surprisingly, however, the task of identifying such analogies has not yet received much attention in the language model era. In this paper, we analyze the capabilities of transformer-based language models on this unsupervised task, using benchmarks obtained from educational settings, as well as more commonly used datasets. We find that off-the-shelf language models can identify analogies to a certain extent, but struggle with abstract and complex relations, and results are highly sensitive to model architecture and hyperparameters. Overall the best results were obtained with GPT-2 and RoBERTa, while configurations using BERT were not able to outperform word embedding models. Our results raise important questions for future work about how, and to what extent, pre-trained language models capture knowledge about abstract semantic relations.


Grapes, berries and robots: is Silicon Valley coming for farm workers jobs?

The Guardian

The robots have arrived in California's fields. This summer, a self-driving tractor was spotted working rows of vines in Napa valley. Described as resembling a "souped-up golf cart", the tractor runs on an electric battery and can be operated remotely with an app. Farther south, strawberry harvesting robots have been picking fruit. Complete with wheels, clipper-tipped arms and a catchment tray, its maker claims the machine can pick almost as many berries as a human with 95% accuracy.


Zero Pixel Directional Boundary by Vector Transform

arXiv.org Artificial Intelligence

Boundaries are among the primary visual cues used by human and computer vision systems. One of the key problems in boundary detection is the label representation, which typically leads to class imbalance and, as a consequence, to thick boundaries that require non-differential post-processing steps to be thinned. In this paper, we re-interpret boundaries as 1-D surfaces and formulate a one-to-one vector transform function that allows for training of boundary prediction completely avoiding the class imbalance issue. Specifically, we define the boundary representation at any point as the unit vector pointing to the closest boundary surface. Our problem formulation leads to the estimation of direction as well as richer contextual information of the boundary, and, if desired, the availability of zero-pixel thin boundaries also at training time. Our method uses no hyper-parameter in the training loss and a fixed stable hyper-parameter at inference. We provide theoretical justification/discussions of the vector transform representation. We evaluate the proposed loss method using a standard architecture and show the excellent performance over other losses and representations on several datasets. Boundaries are important interpretable visual cues that can describe both the low-level image characteristics as well as high-level semantics in an image. Human vision uses occluding contours and boundaries to interpret unseen or seen objects and classes. In several vision tasks, they are exploited as priors (Zhu et al., 2020; Kim et al., 2021; Hatamizadeh et al., 2019; Revaud et al., 2015; Cashman & Fitzgibbon, 2012). Some key works on contours (Cootes et al., 2001; Matthews & Baker, 2004; Kass et al., 1988) have greatly impacted early research in computer vision. Although the advent of end-to-end deep learning has somewhat shifted the focus away from interpretable visual cues, boundary discovery still remains important in computer vision tasks. Boundary detection, however, has seen a rather modest share of such progress. Although, modern deeply learned methods (Xie & Tu, 2015; Liu et al., 2017; Maninis et al., 2017) provide better accuracy and the possibility to learn only the high-level boundaries, a particularly elusive goal in learned boundary detection has been the so-called crisp boundaries (Isola et al., 2014; Wang et al., 2018; Deng et al., 2018).


W-Transformers : A Wavelet-based Transformer Framework for Univariate Time Series Forecasting

arXiv.org Machine Learning

Deep learning utilizing transformers has recently achieved a lot of success in many vital areas such as natural language processing, computer vision, anomaly detection, and recommendation systems, among many others. Among several merits of transformers, the ability to capture long-range temporal dependencies and interactions is desirable for time series forecasting, leading to its progress in various time series applications. In this paper, we build a transformer model for non-stationary time series. The problem is challenging yet crucially important. We present a novel framework for univariate time series representation learning based on the wavelet-based transformer encoder architecture and call it W-Transformer. The proposed W-Transformers utilize a maximal overlap discrete wavelet transformation (MODWT) to the time series data and build local transformers on the decomposed datasets to vividly capture the nonstationarity and long-range nonlinear dependencies in the time series. Evaluating our framework on several publicly available benchmark time series datasets from various domains and with diverse characteristics, we demonstrate that it performs, on average, significantly better than the baseline forecasters for short-term and long-term forecasting, even for datasets that consist of only a few hundred training samples.


$\Delta$-PINNs: physics-informed neural networks on complex geometries

arXiv.org Artificial Intelligence

Physics-informed neural networks (PINNs) have demonstrated promise in solving forward and inverse problems involving partial differential equations. Despite recent progress on expanding the class of problems that can be tackled by PINNs, most of existing use-cases involve simple geometric domains. To date, there is no clear way to inform PINNs about the topology of the domain where the problem is being solved. In this work, we propose a novel positional encoding mechanism for PINNs based on the eigenfunctions of the Laplace-Beltrami operator. This technique allows to create an input space for the neural network that represents the geometry of a given object. We approximate the eigenfunctions as well as the operators involved in the partial differential equations with finite elements. We extensively test and compare the proposed methodology against traditional PINNs in complex shapes, such as a coil, a heat sink and a bunny, with different physics, such as the Eikonal equation and heat transfer. We also study the sensitivity of our method to the number of eigenfunctions used, as well as the discretization used for the eigenfunctions and the underlying operators. Our results show excellent agreement with the ground truth data in cases where traditional PINNs fail to produce a meaningful solution. We envision this new technique will expand the effectiveness of PINNs to more realistic applications.