Rapid advancements in collection, processing, and dissemination of multi-platform molecular and genomics (multi-omics, in short) data has resulted in enormous opportunities to aggregate such data in order to understand, prevent, and treat diseases. This has catalyzed development of integrative methods that can collectively mine multiple types and scales of multi-omics data, in order to provide a more holistic view of human disease evolution and progression (Subramanian et al. 2020). Specifically, in the context of cancer, a disease driven predominantly by agglomerations of several molecular changes (Sun et al. 2021), the importance of synthesizing information from multi-platform omics and clinical sources to understand the cellular basis of the disease is even further underscored. Cellular oncological mechanisms, triggered at different molecular levels of the DNA RNA Protein path, can confer profound phenotypic advantages/disadvantages. While significant improvements have been made in multi-omics data integration methods to unveil such mechanisms, focused on both prognosis (Duan et al. 2021) and treatment (Finotello et al. 2020), the precise functions governing them need detailed and data-driven de-novo evaluations. Our work, in the same vein, aims at two different but inter-related scientific axes: (i) selection of biomarkers associated with cancer prognosis and clinical outcomes, and (ii) learning the mechanism of these biomarkers' effects upon such outcomes via integrating upstream molecular information - we provide some additional scientific context below. Classes of Integrative Omics Models First, we briefly discuss existing integrative omics approaches in order to contextualize the need for our framework. Broadly, most of the existing integrative statistical methods can be classified into two categories - horizontal (meta-analysis type) and vertical (multi-omics) integration procedures (Tseng et al. 2015).

Most works on modeling the conversation history in Conversational Question Answering (CQA) report a single main result on a common CQA benchmark. While existing models show impressive results on CQA leaderboards, it remains unclear whether they are robust to shifts in setting (sometimes to more realistic ones), training data size (e.g. from large to small sets) and domain. In this work, we design and conduct the first large-scale robustness study of history modeling approaches for CQA. We find that high benchmark scores do not necessarily translate to strong robustness, and that various methods can perform extremely differently under different settings. Equipped with the insights from our study, we design a novel prompt-based history modeling approach, and demonstrate its strong robustness across various settings. Our approach is inspired by existing methods that highlight historic answers in the passage. However, instead of highlighting by modifying the passage token embeddings, we add textual prompts directly in the passage text. Our approach is simple, easy-to-plug into practically any model, and highly effective, thus we recommend it as a starting point for future model developers. We also hope that our study and insights will raise awareness to the importance of robustness-focused evaluation, in addition to obtaining high leaderboard scores, leading to better CQA systems.

Agents that can follow language instructions are expected to be useful in a variety of situations such as navigation. However, training neural network-based agents requires numerous paired trajectories and languages. This paper proposes using multimodal generative models for semi-supervised learning in the instruction following tasks. The models learn a shared representation of the paired data, and enable semi-supervised learning by reconstructing unpaired data through the representation. Key challenges in applying the models to sequence-to-sequence tasks including instruction following are learning a shared representation of variable-length mulitimodal data and incorporating attention mechanisms. To address the problems, this paper proposes a novel network architecture to absorb the difference in the sequence lengths of the multimodal data. In addition, to further improve the performance, this paper shows how to incorporate the generative model-based approach with an existing semi-supervised method called a speaker-follower model, and proposes a regularization term that improves inference using unpaired trajectories. Experiments on BabyAI and Room-to-Room (R2R) environments show that the proposed method improves the performance of instruction following by leveraging unpaired data, and improves the performance of the speaker-follower model by 2\% to 4\% in R2R.

A major goal in robotics is to enable intelligent mobile robots to operate smoothly in shared human-robot environments. One of the most fundamental capabilities in service of this goal is competent navigation in this ``social" context. As a result, there has been a recent surge of research on social navigation; and especially as it relates to the handling of conflicts between agents during social navigation. These developments introduce a variety of models and algorithms, however as this research area is inherently interdisciplinary, many of the relevant papers are not comparable and there is no shared standard vocabulary. This survey aims to bridge this gap by introducing such a common language, using it to survey existing work, and highlighting open problems. It starts by defining the boundaries of this survey to a limited, yet highly common type of social navigation - conflict avoidance. Within this proposed scope, this survey introduces a detailed taxonomy of the conflict avoidance components. This survey then maps existing work into this taxonomy, while discussing papers using its framing. Finally, this paper proposes some future research directions and open problems that are currently on the frontier of social navigation to aid ongoing and future research.

The LM-cut heuristic, both alone and as part of the operator counting framework, represents one of the most successful heuristics for classical planning. In this paper, we generalize LM-cut and its use in operator counting to optimal numeric planning with simple conditions and simple numeric effects, i.e., linear expressions over numeric state variables and actions that increase or decrease such variables by constant quantities. We introduce a variant of hmaxhbd (a previously proposed numeric hmax heuristic) based on the delete-relaxed version of such planning tasks and show that, although inadmissible by itself, our variant yields a numeric version of the classical LM-cut heuristic which is admissible. We classify the three existing families of heuristics for this class of numeric planning tasks and introduce the LM-cut family, proving dominance or incomparability between all pairs of existing max and LM-cut heuristics for numeric planning with simple conditions. Our extensive empirical evaluation shows that the new LM-cut heuristic, both on its own and as part of the operator counting framework, is the state-of-the-art for this class of numeric planning problem.

Charger Logistics is a world class asset-based carrier. We specialize in delivering assets, on time and on budget. With the diverse fleet of equipment, we can handle a range of freight, including dedicated loads, specialized hauls, temperature-controlled goods and HAZMAT cargo. We invest our time and support the employees to provide them with the room to learn and grow their expertise and work their way up. We are entrepreneurial-minded organization that welcomes and support individual idea and strategies.

Transformer-based pretrained language models (LMs) are ubiquitous across natural language understanding, but cannot be applied to long sequences such as stories, scientific articles and long documents, due to their quadratic complexity. While a myriad of efficient transformer variants have been proposed, they are typically based on custom implementations that require expensive pretraining from scratch. In this work, we propose SLED: SLiding-Encoder and Decoder, a simple approach for processing long sequences that re-uses and leverages battle-tested short-text pretrained LMs. Specifically, we partition the input into overlapping chunks, encode each with a short-text LM encoder and use the pretrained decoder to fuse information across chunks (fusion-in-decoder). We illustrate through controlled experiments that SLED offers a viable strategy for long text understanding and evaluate our approach on SCROLLS, a benchmark with seven datasets across a wide range of language understanding tasks. We find that SLED is competitive with specialized models that are up to 50x larger and require a dedicated and expensive pretraining step.

Quantum computing is a game-changing technology for global academia, research centers and industries including computational science, mathematics, finance, pharmaceutical, materials science, chemistry and cryptography. Although it has seen a major boost in the last decade, we are still a long way from reaching the maturity of a full-fledged quantum computer. That said, we will be in the Noisy-Intermediate Scale Quantum (NISQ) era for a long time, working on dozens or even thousands of qubits quantum computing systems. An outstanding challenge, then, is to come up with an application that can reliably carry out a nontrivial task of interest on the near-term quantum devices with non-negligible quantum noise. To address this challenge, several near-term quantum computing techniques, including variational quantum algorithms, error mitigation, quantum circuit compilation and benchmarking protocols, have been proposed to characterize and mitigate errors, and to implement algorithms with a certain resistance to noise, so as to enhance the capabilities of near-term quantum devices and explore the boundaries of their ability to realize useful applications. Besides, the development of near-term quantum devices is inseparable from the efficient classical simulation, which plays a vital role in quantum algorithm design and verification, error-tolerant verification and other applications. This review will provide a thorough introduction of these near-term quantum computing techniques, report on their progress, and finally discuss the future prospect of these techniques, which we hope will motivate researchers to undertake additional studies in this field.

Spatial autocorrelation and spatial heterogeneity widely exist in spatial data, which make the traditional machine learning model perform badly. Spatial domain generalization is a spatial extension of domain generalization, which can generalize to unseen spatial domains in continuous 2D space. Specifically, it learns a model under varying data distributions that generalizes to unseen domains. Although tremendous success has been achieved in domain generalization, there exist very few works on spatial domain generalization. The advancement of this area is challenged by: 1) Difficulty in characterizing spatial heterogeneity, and 2) Difficulty in obtaining predictive models for unseen locations without training data. To address these challenges, this paper proposes a generic framework for spatial domain generalization. Specifically, We develop the spatial interpolation graph neural network that handles spatial data as a graph and learns the spatial embedding on each node and their relationships. The spatial interpolation graph neural network infers the spatial embedding of an unseen location during the test phase. Then the spatial embedding of the target location is used to decode the parameters of the downstream-task model directly on the target location. Finally, extensive experiments on thirteen real-world datasets demonstrate the proposed method's strength.

Content moderation is the process of screening and monitoring user-generated content online. It plays a crucial role in stopping content resulting from unacceptable behaviors such as hate speech, harassment, violence against specific groups, terrorism, racism, xenophobia, homophobia, or misogyny, to mention some few, in Online Social Platforms. These platforms make use of a plethora of tools to detect and manage malicious information; however, malicious actors also improve their skills, developing strategies to surpass these barriers and continuing to spread misleading information. Twisting and camouflaging keywords are among the most used techniques to evade platform content moderation systems. In response to this recent ongoing issue, this paper presents an innovative approach to address this linguistic trend in social networks through the simulation of different content evasion techniques and a multilingual Transformer model for content evasion detection. In this way, we share with the rest of the scientific community a multilingual public tool, named "pyleetspeak" to generate/simulate in a customizable way the phenomenon of content evasion through automatic word camouflage and a multilingual Named-Entity Recognition (NER) Transformer-based model tuned for its recognition and detection. The multilingual NER model is evaluated in different textual scenarios, detecting different types and mixtures of camouflage techniques, achieving an overall weighted F1 score of 0.8795. This article contributes significantly to countering malicious information by developing multilingual tools to simulate and detect new methods of evasion of content on social networks, making the fight against information disorders more effective.