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Higher order organizational features can distinguish protein interaction networks of disease classes: a case study of neoplasms and neurological diseases

arXiv.org Artificial Intelligence

Neoplasms (NPs) and neurological diseases and disorders (NDDs) are amongst the major classes of diseases underlying deaths of a disproportionate number of people worldwide. To determine if there exist some distinctive features in the local wiring patterns of protein interactions emerging at the onset of a disease belonging to either of these two classes, we examined 112 and 175 protein interaction networks belonging to NPs and NDDs, respectively. Orbit usage profiles (OUPs) for each of these networks were enumerated by investigating the networks' local topology. 56 non-redundant OUPs (nrOUPs) were derived and used as network features for classification between these two disease classes. Four machine learning classifiers, namely, k-nearest neighbour (KNN), support vector machine (SVM), deep neural network (DNN), random forest (RF) were trained on these data. DNN obtained the greatest average AUPRC (0.988) among these classifiers. DNNs developed on node2vec and the proposed nrOUPs embeddings were compared using 5-fold cross validation on the basis of average values of the six of performance measures, viz., AUPRC, Accuracy, Sensitivity, Specificity, Precision and MCC. It was found that nrOUPs based classifier performed better in all of these six performance measures.


A Hypervolume Based Approach to Rank Intuitionistic Fuzzy Sets and Its Extension to Multi-criteria Decision Making Under Uncertainty

arXiv.org Artificial Intelligence

Ranking intuitionistic fuzzy sets with distance based ranking methods requires to calculate the distance between intuitionistic fuzzy set and a reference point which is known to have either maximum (positive ideal solution) or minimum (negative ideal solution) value. These group of approaches assume that as the distance of an intuitionistic fuzzy set to the reference point is decreases, the similarity of intuitionistic fuzzy set with that point increases. This is a misconception because an intuitionistic fuzzy set which has the shortest distance to positive ideal solution does not have to be the furthest from negative ideal solution for all circumstances when the distance function is nonlinear. This paper gives a mathematical proof of why this assumption is not valid for any of the non-linear distance functions and suggests a hypervolume based ranking approach as an alternative to distance based ranking. In addition, the suggested ranking approach is extended as a new multicriteria decision making method, HyperVolume based ASsessment (HVAS). HVAS is applied for multicriteria assessment of Turkey's energy alternatives. Results are compared with three well known distance based multicriteria decision making methods (TOPSIS, VIKOR, and CODAS).


Russians Hacked JFK Airport Taxi Dispatch in Line-Skipping Scheme

WIRED

We at WIRED are winding down for the year and gearing up for what is sure to be an eventful 2023. This week, following a new surge in mayhem at Twitter, we dove into exactly why the public needs real-time flight tracking, even if Elon Musk claims it's the equivalent of doxing. The crucial transparency this publicly available data provides far outweighs the limited privacy value that censoring would give to the world's rich and powerful. Unfortunately, Musk's threats of legal action against the developer of the @ElonJet tracker are having broader chilling effects. Meanwhile, Iran's internet blackouts--a response to widespread civil rights protests--are sabotaging the country's economy, according to a new assessment from the US Department of State.


Data Modeller at Experian - Madrid, Spain

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We are the leading global information services company, providing data and analytical tools to our clients around the world. We help businesses to manage credit risk, prevent fraud, target marketing offers and automate decision making. We also help people to check their credit report and credit score and protect against identity theft. We employ approximately 17,000 people in 37 countries and our corporate headquarters are in Dublin, Ireland, with operational headquarters in Nottingham, UK; California, US; and São Paulo, Brazil. Experian is committed to creating a diverse environment and is proud to be an equal opportunity employer.


Automatic stabilization of finite-element simulations using neural networks and hierarchical matrices

arXiv.org Artificial Intelligence

Petrov-Galerkin formulations with optimal test functions allow for the stabilization of finite element simulations. In particular, given a discrete trial space, the optimal test space induces a numerical scheme delivering the best approximation in terms of a problem-dependent energy norm. This ideal approach has two shortcomings: first, we need to explicitly know the set of optimal test functions; and second, the optimal test functions may have large supports inducing expensive dense linear systems. Nevertheless, parametric families of PDEs are an example where it is worth investing some (offline) computational effort to obtain stabilized linear systems that can be solved efficiently, for a given set of parameters, in an online stage. Therefore, as a remedy for the first shortcoming, we explicitly compute (offline) a function mapping any PDE-parameter, to the matrix of coefficients of optimal test functions (in a basis expansion) associated with that PDE-parameter. Next, as a remedy for the second shortcoming, we use the low-rank approximation to hierarchically compress the (non-square) matrix of coefficients of optimal test functions. In order to accelerate this process, we train a neural network to learn a critical bottleneck of the compression algorithm (for a given set of PDE-parameters). When solving online the resulting (compressed) Petrov-Galerkin formulation, we employ a GMRES iterative solver with inexpensive matrix-vector multiplications thanks to the low-rank features of the compressed matrix. We perform experiments showing that the full online procedure as fast as the original (unstable) Galerkin approach. In other words, we get the stabilization with hierarchical matrices and neural networks practically for free. We illustrate our findings by means of 2D Eriksson-Johnson and Hemholtz model problems.


Harnessing Elastic Energy to Transfer Reciprocating Actuation into Rotary Motion

arXiv.org Artificial Intelligence

The ability to convert reciprocating, i.e., alternating, actuation into rotary motion using linkages is hindered fundamentally by their poor torque transmission capability around kinematic singularity configurations. Here, we harness the elastic potential energy of a linear spring attached to the coupler link of four-bar mechanisms to manipulate force transmission around the kinematic singularities. We developed a theoretical model to explore the parameter space for proper force transmission in slider-crank and rocker-crank four-bar kinematics. Finally, we verified the proposed model and methodology by building and testing a macro-scale prototype of a slider-crank mechanism. We expect this approach to enable the development of small-scale rotary engines and robotic devices with closed kinematic chains dealing with serial kinematic singularities, such as linkages and parallel manipulators.


Learning from Heterogeneous Data Based on Social Interactions over Graphs

arXiv.org Artificial Intelligence

This work proposes a decentralized architecture, where individual agents aim at solving a classification problem while observing streaming features of different dimensions and arising from possibly different distributions. In the context of social learning, several useful strategies have been developed, which solve decision making problems through local cooperation across distributed agents and allow them to learn from streaming data. However, traditional social learning strategies rely on the fundamental assumption that each agent has significant prior knowledge of the underlying distribution of the observations. In this work we overcome this issue by introducing a machine learning framework that exploits social interactions over a graph, leading to a fully data-driven solution to the distributed classification problem. In the proposed social machine learning (SML) strategy, two phases are present: in the training phase, classifiers are independently trained to generate a belief over a set of hypotheses using a finite number of training samples; in the prediction phase, classifiers evaluate streaming unlabeled observations and share their instantaneous beliefs with neighboring classifiers. We show that the SML strategy enables the agents to learn consistently under this highly-heterogeneous setting and allows the network to continue learning even during the prediction phase when it is deciding on unlabeled samples. The prediction decisions are used to continually improve performance thereafter in a manner that is markedly different from most existing static classification schemes where, following training, the decisions on unlabeled data are not re-used to improve future performance.


Senior Machine Learning Engineer, Speech at ASAPP - Remote - Argentina

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Find open roles in Artificial Intelligence (AI), Machine Learning (ML), Natural Language Processing (NLP), Computer Vision (CV), Data Engineering, Data Analytics, Big Data, and Data Science in general, filtered by job title or popular skill, toolset and products used.


Experiments on Turkish ASR with Self-Supervised Speech Representation Learning

arXiv.org Artificial Intelligence

While the Turkish language is listed among low-resource languages, literature on Turkish automatic speech recognition (ASR) is relatively old. In this report, we present our findings on Turkish ASR with speech representation learning using HUBERT. We investigate pre-training HUBERT for Turkish with large-scale data curated from online resources. We pre-train our model using 6,500 hours of speech data from YouTube. The results show that the models are not ready for commercial use since they are not robust against disturbances that typically occur in real-world settings such as variations in accents, slang, background noise and interference. We analyze typical errors and the limitations of the models for use in commercial settings.


Extended method for Statistical Signal Characterization using moments and cumulants: Application to recognition of pattern alterations in pulse-like waveforms employing Artificial Neural Networks

arXiv.org Artificial Intelligence

We propose a statistical procedure to characterize and extract features from a waveform that can be applied as a pre-processing signal stage in a pattern recognition task using Artificial Neural Networks. Such a procedure is based on measuring a 30-parameters set of moments and cumulants from the waveform, its derivative, and its integral. The technique is presented as an extension of the Statistical Signal Characterization method existing in the literature. As a testing methodology, we used the procedure to distinguish a pulse-like signal from different versions of itself with frequency spectrum alterations or deformations. The recognition task was performed by single feed-forward back-propagation networks trained for the case Sinc-, Gaussian-, and Chirp-pulse waveform. Because of the success obtained in these examples, we can conclude that the proposed extended statistical signal characterization method is an effective tool for pattern-recognition applications. In particular, we can use it as a fast pre-processing stage in embedded systems with limited memory or computational capability.