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Are Large Language Models Ready for Healthcare? A Comparative Study on Clinical Language Understanding

arXiv.org Artificial Intelligence

Large language models (LLMs) have made significant progress in various domains, including healthcare. However, the specialized nature of clinical language understanding tasks presents unique challenges and limitations that warrant further investigation. In this study, we conduct a comprehensive evaluation of state-of-the-art LLMs, namely GPT-3.5, GPT-4, and Bard, within the realm of clinical language understanding tasks. These tasks span a diverse range, including named entity recognition, relation extraction, natural language inference, semantic textual similarity, document classification, and question-answering. We also introduce a novel prompting strategy, self-questioning prompting (SQP), tailored to enhance LLMs' performance by eliciting informative questions and answers pertinent to the clinical scenarios at hand. Our evaluation underscores the significance of task-specific learning strategies and prompting techniques for improving LLMs' effectiveness in healthcare-related tasks. Additionally, our in-depth error analysis on the challenging relation extraction task offers valuable insights into error distribution and potential avenues for improvement using SQP. Our study sheds light on the practical implications of employing LLMs in the specialized domain of healthcare, serving as a foundation for future research and the development of potential applications in healthcare settings.


Generating Multidimensional Clusters With Support Lines

arXiv.org Artificial Intelligence

Synthetic data is essential for assessing clustering techniques, complementing and extending real data, and allowing for more complete coverage of a given problem's space. In turn, synthetic data generators have the potential of creating vast amounts of data -- a crucial activity when real-world data is at premium -- while providing a well-understood generation procedure and an interpretable instrument for methodically investigating cluster analysis algorithms. Here, we present Clugen, a modular procedure for synthetic data generation, capable of creating multidimensional clusters supported by line segments using arbitrary distributions. Clugen is open source, comprehensively unit tested and documented, and is available for the Python, R, Julia, and MATLAB/Octave ecosystems. We demonstrate that our proposal can produce rich and varied results in various dimensions, is fit for use in the assessment of clustering algorithms, and has the potential to be a widely used framework in diverse clustering-related research tasks.


X$^2$-VLM: All-In-One Pre-trained Model For Vision-Language Tasks

arXiv.org Artificial Intelligence

Vision language pre-training aims to learn alignments between vision and language from a large amount of data. Most existing methods only learn image-text alignments. Some others utilize pre-trained object detectors to leverage vision language alignments at the object level. In this paper, we propose to learn multi-grained vision language alignments by a unified pre-training framework that learns multi-grained aligning and multi-grained localization simultaneously. Based on it, we present X$^2$-VLM, an all-in-one model with a flexible modular architecture, in which we further unify image-text pre-training and video-text pre-training in one model. X$^2$-VLM is able to learn unlimited visual concepts associated with diverse text descriptions. Experiment results show that X$^2$-VLM performs the best on base and large scale for both image-text and video-text tasks, making a good trade-off between performance and model scale. Moreover, we show that the modular design of X$^2$-VLM results in high transferability for it to be utilized in any language or domain. For example, by simply replacing the text encoder with XLM-R, X$^2$-VLM outperforms state-of-the-art multilingual multi-modal pre-trained models without any multilingual pre-training. The code and pre-trained models are available at https://github.com/zengyan-97/X2-VLM.


Unveiling Exotic Magnetic Phases in Fibonacci Quasicrystalline Stacking of Ferromagnetic Layers through Machine Learning

arXiv.org Artificial Intelligence

In this study, we conduct a comprehensive theoretical analysis of a Fibonacci quasicrystalline stacking of ferromagnetic layers, potentially realizable using van der Waals magnetic materials. We construct a model of this magnetic heterostructure, which includes up to second neighbor interlayer magnetic interactions, that displays a complex relationship between geometric frustration and magnetic order in this quasicrystalline system. To navigate the parameter space and identify distinct magnetic phases, we employ a machine learning approach, which proves to be a powerful tool in revealing the complex magnetic behavior of this system. We offer a thorough description of the magnetic phase diagram as a function of the model parameters. Notably, we discover among other collinear and non-collinear phases, a unique ferromagnetic alternating helical phase. In this non-collinear quasiperiodic ferromagnetic configuration the magnetization decreases logarithmically with the stack height.


PD-SEG: Population Disaggregation Using Deep Segmentation Networks For Improved Built Settlement Mask

arXiv.org Artificial Intelligence

Any policy-level decision-making procedure and academic research involving the optimum use of resources for development and planning initiatives depends on accurate population density statistics. The current cutting-edge datasets offered by WorldPop and Meta do not succeed in achieving this aim for developing nations like Pakistan; the inputs to their algorithms provide flawed estimates that fail to capture the spatial and land-use dynamics. In order to precisely estimate population counts at a resolution of 30 meters by 30 meters, we use an accurate built settlement mask obtained using deep segmentation networks and satellite imagery. The Points of Interest (POI) data is also used to exclude non-residential areas.


\`{I}r\`{o}y\`{i}nSpeech: A multi-purpose Yor\`{u}b\'{a} Speech Corpus

arXiv.org Artificial Intelligence

We introduce the \`{I}r\`{o}y\`{i}nSpeech corpus -- a new dataset influenced by a desire to increase the amount of high quality, freely available, contemporary Yor\`{u}b\'{a} speech. We release a multi-purpose dataset that can be used for both TTS and ASR tasks. We curated text sentences from the news and creative writing domains under an open license i.e., CC-BY-4.0 and had multiple speakers record each sentence. We provide 5000 of our utterances to the Common Voice platform to crowdsource transcriptions online. The dataset has 38.5 hours of data in total, recorded by 80 volunteers.


Click-Conversion Multi-Task Model with Position Bias Mitigation for Sponsored Search in eCommerce

arXiv.org Artificial Intelligence

Position bias, the phenomenon whereby users tend to focus on higher-ranked items of the search result list regardless of the actual relevance to queries, is prevailing in many ranking systems. Position bias in training data biases the ranking model, leading to increasingly unfair item rankings, click-through-rate (CTR), and conversion rate (CVR) predictions. To jointly mitigate position bias in both item CTR and CVR prediction, we propose two position-bias-free CTR and CVR prediction models: Position-Aware Click-Conversion (PACC) and PACC via Position Embedding (PACC-PE). PACC is built upon probability decomposition and models position information as a probability. PACC-PE utilizes neural networks to model product-specific position information as embedding. Experiments on the E-commerce sponsored product search dataset show that our proposed models have better ranking effectiveness and can greatly alleviate position bias in both CTR and CVR prediction.


Automatic Extraction of the Romanian Academic Word List: Data and Methods

arXiv.org Artificial Intelligence

This paper presents the methodology and data used for the automatic extraction of the Romanian Academic Word List (Ro-AWL). Academic Word Lists are useful in both L2 and L1 teaching contexts. For the Romanian language, no such resource exists so far. Ro-AWL has been generated by combining methods from corpus and computational linguistics with L2 academic writing approaches. We use two types of data: (a) existing data, such as the Romanian Frequency List based on the ROMBAC corpus, and (b) self-compiled data, such as the expert academic writing corpus EXPRES. For constructing the academic word list, we follow the methodology for building the Academic Vocabulary List for the English language. The distribution of Ro-AWL features (general distribution, POS distribution) into four disciplinary datasets is in line with previous research. Ro-AWL is freely available and can be used for teaching, research and NLP applications.


Simulation-based Inference for Cardiovascular Models

arXiv.org Artificial Intelligence

Over the past decades, hemodynamics simulators have steadily evolved and have become tools of choice for studying cardiovascular systems in-silico. While such tools are routinely used to simulate whole-body hemodynamics from physiological parameters, solving the corresponding inverse problem of mapping waveforms back to plausible physiological parameters remains both promising and challenging. Motivated by advances in simulation-based inference (SBI), we cast this inverse problem as statistical inference. In contrast to alternative approaches, SBI provides \textit{posterior distributions} for the parameters of interest, providing a \textit{multi-dimensional} representation of uncertainty for \textit{individual} measurements. We showcase this ability by performing an in-silico uncertainty analysis of five biomarkers of clinical interest comparing several measurement modalities. Beyond the corroboration of known facts, such as the feasibility of estimating heart rate, our study highlights the potential of estimating new biomarkers from standard-of-care measurements. SBI reveals practically relevant findings that cannot be captured by standard sensitivity analyses, such as the existence of sub-populations for which parameter estimation exhibits distinct uncertainty regimes. Finally, we study the gap between in-vivo and in-silico with the MIMIC-III waveform database and critically discuss how cardiovascular simulations can inform real-world data analysis.


Exploring Flip Flop memories and beyond: training recurrent neural networks with key insights

arXiv.org Artificial Intelligence

Training neural networks to perform different tasks is relevant across various disciplines. In particular, Recurrent Neural Networks (RNNs) are of great interest in Computational Neuroscience. Open-source frameworks dedicated to Machine Learning, such as Tensorflow and Keras have produced significant changes in the development of technologies that we currently use. This work aims to make a significant contribution by comprehensively investigating and describing the implementation of a temporal processing task, specifically a 3-bit Flip Flop memory. We delve into the entire modelling process, encompassing equations, task parametrization, and software development. The obtained networks are meticulously analyzed to elucidate dynamics, aided by an array of visualization and analysis tools. Moreover, the provided code is versatile enough to facilitate the modelling of diverse tasks and systems. Furthermore, we present how memory states can be efficiently stored in the vertices of a cube in the dimensionally reduced space, supplementing previous results with a distinct approach.