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NeuroGraph: Benchmarks for Graph Machine Learning in Brain Connectomics

arXiv.org Artificial Intelligence

Machine learning provides a valuable tool for analyzing high-dimensional functional neuroimaging data, and is proving effective in predicting various neurological conditions, psychiatric disorders, and cognitive patterns. In functional magnetic resonance imaging (MRI) research, interactions between brain regions are commonly modeled using graph-based representations. The potency of graph machine learning methods has been established across myriad domains, marking a transformative step in data interpretation and predictive modeling. Yet, despite their promise, the transposition of these techniques to the neuroimaging domain has been challenging due to the expansive number of potential preprocessing pipelines and the large parameter search space for graph-based dataset construction. In this paper, we introduce NeuroGraph, a collection of graph-based neuroimaging datasets, and demonstrated its utility for predicting multiple categories of behavioral and cognitive traits. We delve deeply into the dataset generation search space by crafting 35 datasets that encompass static and dynamic brain connectivity, running in excess of 15 baseline methods for benchmarking. Additionally, we provide generic frameworks for learning on both static and dynamic graphs. Our extensive experiments lead to several key observations. Notably, using correlation vectors as node features, incorporating larger number of regions of interest, and employing sparser graphs lead to improved performance. To foster further advancements in graph-based data driven neuroimaging analysis, we offer a comprehensive open-source Python package that includes the benchmark datasets, baseline implementations, model training, and standard evaluation.


Bridging the Gap Between Offline and Online Reinforcement Learning Evaluation Methodologies

arXiv.org Artificial Intelligence

Reinforcement learning (RL) has shown great promise with algorithms learning in environments with large state and action spaces purely from scalar reward signals. A crucial challenge for current deep RL algorithms is that they require a tremendous amount of environment interactions for learning. This can be infeasible in situations where such interactions are expensive; such as in robotics. Offline RL algorithms try to address this issue by bootstrapping the learning process from existing logged data without needing to interact with the environment from the very beginning. While online RL algorithms are typically evaluated as a function of the number of environment interactions, there exists no single established protocol for evaluating offline RL methods.In this paper, we propose a sequential approach to evaluate offline RL algorithms as a function of the training set size and thus by their data efficiency. Sequential evaluation provides valuable insights into the data efficiency of the learning process and the robustness of algorithms to distribution changes in the dataset while also harmonizing the visualization of the offline and online learning phases. Our approach is generally applicable and easy to implement. We compare several existing offline RL algorithms using this approach and present insights from a variety of tasks and offline datasets.


MathGloss: Building mathematical glossaries from text

arXiv.org Artificial Intelligence

MathGloss is a project to create a knowledge graph (KG) for undergraduate mathematics from text, automatically, using modern natural language processing (NLP) tools and resources already available on the web. MathGloss is a linked database of undergraduate concepts in mathematics. So far, it combines five resources: (i) Wikidata, a collaboratively edited, multilingual knowledge graph hosted by the Wikimedia Foundation, (ii) terms covered in mathematics courses at the University of Chicago, (iii) the syllabus of the French undergraduate mathematics curriculum which includes hyperlinks to the automated theorem prover Lean 4, (iv) MuLiMa, a multilingual dictionary of mathematics curated by mathematicians, and (v) the nLab, a wiki for category theory also curated by mathematicians. MathGloss's goal is to bring together resources for learning mathematics and to allow every mathematician to tailor their learning to their own preferences. Moreover, by organizing different resources for learning undergraduate mathematics alongside those for learning formal mathematics, we hope to make it easier for mathematicians and formal tools (theorem provers, computer algebra systems, etc) experts to "understand" each other and break down some of the barriers to formal math.


CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews

arXiv.org Artificial Intelligence

Systematic literature reviews (SLRs) play an essential role in summarising, synthesising and validating scientific evidence. In recent years, there has been a growing interest in using machine learning techniques to automate the identification of relevant studies for SLRs. However, the lack of standardised evaluation datasets makes comparing the performance of such automated literature screening systems difficult. In this paper, we analyse the citation screening evaluation datasets, revealing that many of the available datasets are either too small, suffer from data leakage or have limited applicability to systems treating automated literature screening as a classification task, as opposed to, for example, a retrieval or question-answering task. To address these challenges, we introduce CSMeD, a meta-dataset consolidating nine publicly released collections, providing unified access to 325 SLRs from the fields of medicine and computer science. CSMeD serves as a comprehensive resource for training and evaluating the performance of automated citation screening models. Additionally, we introduce CSMeD-FT, a new dataset designed explicitly for evaluating the full text publication screening task. To demonstrate the utility of CSMeD, we conduct experiments and establish baselines on new datasets.


Better with Less: A Data-Active Perspective on Pre-Training Graph Neural Networks

arXiv.org Artificial Intelligence

Pre-training on graph neural networks (GNNs) aims to learn transferable knowledge for downstream tasks with unlabeled data, and it has recently become an active research area. The success of graph pre-training models is often attributed to the massive amount of input data. In this paper, however, we identify the curse of big data phenomenon in graph pre-training: more training data do not necessarily lead to better downstream performance. Motivated by this observation, we propose a better-with-less framework for graph pre-training: fewer, but carefully chosen data are fed into a GNN model to enhance pre-training. The proposed pre-training pipeline is called the data-active graph pre-training (APT) framework, and is composed of a graph selector and a pre-training model. The graph selector chooses the most representative and instructive data points based on the inherent properties of graphs as well as predictive uncertainty. The proposed predictive uncertainty, as feedback from the pre-training model, measures the confidence level of the model in the data. When fed with the chosen data, on the other hand, the pre-training model grasps an initial understanding of the new, unseen data, and at the same time attempts to remember the knowledge learned from previous data. Therefore, the integration and interaction between these two components form a unified framework (APT), in which graph pre-training is performed in a progressive and iterative way. Experiment results show that the proposed APT is able to obtain an efficient pre-training model with fewer training data and better downstream performance.


Approximating Two-Layer Feedforward Networks for Efficient Transformers

arXiv.org Artificial Intelligence

How to reduce compute and memory requirements of neural networks (NNs) without sacrificing performance? Many recent works use sparse Mixtures of Experts (MoEs) to build resource-efficient large language models (LMs). Here we introduce several novel perspectives on MoEs, presenting a general framework that unifies various methods to approximate two-layer NNs (e.g., feedforward blocks of Transformers), including product-key memories (PKMs). Leveraging insights from this framework, we propose methods to improve both MoEs and PKMs. Unlike prior work that compares MoEs with dense baselines under the compute-equal condition, our evaluation condition is parameter-equal, which is crucial to properly evaluate LMs. We show that our MoEs are competitive with the dense Transformer-XL on both the WikiText-103 and enwiki8 datasets at two different scales, while being much more resource efficient. This demonstrates that MoEs are relevant not only to extremely large LMs but also to any-scale resource-efficient LMs. Our code is public.


Editing Personality for LLMs

arXiv.org Artificial Intelligence

This paper introduces an innovative task focused on editing the personality traits of Large Language Models (LLMs). This task seeks to adjust the models' responses to opinion-related questions on specified topics since an individual's personality often manifests in the form of their expressed opinions, thereby showcasing different personality traits. Specifically, we construct a new benchmark dataset PersonalityEdit to address this task. Drawing on the theory in Social Psychology, we isolate three representative traits, namely Neuroticism, Extraversion, and Agreeableness, as the foundation for our benchmark. We then gather data using GPT-4, generating responses that not only align with a specified topic but also embody the targeted personality trait. We conduct comprehensive experiments involving various baselines and discuss the representation of personality behavior in LLMs. Our intriguing findings uncover potential challenges of the proposed task, illustrating several remaining issues. We anticipate that our work can provide the NLP community with insights. Code and datasets will be released at https://github.com/zjunlp/EasyEdit.


Unveiling the Pitfalls of Knowledge Editing for Large Language Models

arXiv.org Artificial Intelligence

As the cost associated with fine-tuning Large Language Models (LLMs) continues to rise, recent research efforts have pivoted towards developing methodologies to edit implicit knowledge embedded within LLMs. Yet, there's still a dark cloud lingering overhead -- will knowledge editing trigger butterfly effect? since it is still unclear whether knowledge editing might introduce side effects that pose potential risks or not. This paper pioneers the investigation into the potential pitfalls associated with knowledge editing for LLMs. To achieve this, we introduce new benchmark datasets and propose innovative evaluation metrics. Our results underline two pivotal concerns: (1) Knowledge Conflict: Editing groups of facts that logically clash can magnify the inherent inconsistencies in LLMs-a facet neglected by previous methods. (2) Knowledge Distortion: Altering parameters with the aim of editing factual knowledge can irrevocably warp the innate knowledge structure of LLMs. Experimental results vividly demonstrate that knowledge editing might inadvertently cast a shadow of unintended consequences on LLMs, which warrant attention and efforts for future works. Code is available at https://github.com/zjunlp/PitfallsKnowledgeEditing.


Beyond Labeling Oracles: What does it mean to steal ML models?

arXiv.org Artificial Intelligence

Model extraction attacks are designed to steal trained models with only query access, as is often provided through APIs that ML-as-a-Service providers offer. ML models are expensive to train, in part because data is hard to obtain, and a primary incentive for model extraction is to acquire a model while incurring less cost than training from scratch. Literature on model extraction commonly claims or presumes that the attacker is able to save on both data acquisition and labeling costs. We show that the attacker often does not. This is because current attacks implicitly rely on the adversary being able to sample from the victim model's data distribution. We thoroughly evaluate factors influencing the success of model extraction. We discover that prior knowledge of the attacker, i.e. access to in-distribution data, dominates other factors like the attack policy the adversary follows to choose which queries to make to the victim model API. Thus, an adversary looking to develop an equally capable model with a fixed budget has little practical incentive to perform model extraction, since for the attack to work they need to collect in-distribution data, saving only on the cost of labeling. With low labeling costs in the current market, the usefulness of such attacks is questionable. Ultimately, we demonstrate that the effect of prior knowledge needs to be explicitly decoupled from the attack policy. To this end, we propose a benchmark to evaluate attack policy directly.


Unsupervised discovery of Interpretable Visual Concepts

arXiv.org Artificial Intelligence

Providing interpretability of deep-learning models to non-experts, while fundamental for a responsible real-world usage, is challenging. Attribution maps from xAI techniques, such as Integrated Gradients, are a typical example of a visualization technique containing a high level of information, but with difficult interpretation. In this paper, we propose two methods, Maximum Activation Groups Extraction (MAGE) and Multiscale Interpretable Visualization (Ms-IV), to explain the model's decision, enhancing global interpretability. MAGE finds, for a given CNN, combinations of features which, globally, form a semantic meaning, that we call concepts. We group these similar feature patterns by clustering in ``concepts'', that we visualize through Ms-IV. This last method is inspired by Occlusion and Sensitivity analysis (incorporating causality), and uses a novel metric, called Class-aware Order Correlation (CaOC), to globally evaluate the most important image regions according to the model's decision space. We compare our approach to xAI methods such as LIME and Integrated Gradients. Experimental results evince the Ms-IV higher localization and faithfulness values. Finally, qualitative evaluation of combined MAGE and Ms-IV demonstrates humans' ability to agree, based on the visualization, with the decision of clusters' concepts; and, to detect, among a given set of networks, the existence of bias.