Pre-trained models of source code have recently been successfully applied to a wide variety of Software Engineering tasks; they have also seen some practical adoption in practice, e.g. for code completion. Yet, we still know very little about what these pre-trained models learn about source code. In this article, we use probing--simple diagnostic tasks that do not further train the models--to discover to what extent pre-trained models learn about specific aspects of source code. We use an extensible framework to define 15 probing tasks that exercise surface, syntactic, structural and semantic characteristics of source code. We probe 8 pre-trained source code models, as well as a natural language model (BERT) as our baseline. We find that models that incorporate some structural information (such as GraphCodeBERT) have a better representation of source code characteristics. Surprisingly, we find that for some probing tasks, BERT is competitive with the source code models, indicating that there are ample opportunities to improve source-code specific pre-training on the respective code characteristics. We encourage other researchers to evaluate their models with our probing task suite, so that they may peer into the hidden layers of the models and identify what intrinsic code characteristics are encoded.

Multi-relation question answering (QA) is a challenging task, where given questions usually require long reasoning chains in KGs that consist of multiple relations. Recently, methods with explicit multi-step reasoning over KGs have been prominently used in this task and have demonstrated promising performance. Examples include methods that perform stepwise label propagation through KG triples and methods that navigate over KG triples based on reinforcement learning. A main weakness of these methods is that their reasoning mechanisms are usually complex and difficult to implement or train. In this paper, we argue that multi-relation QA can be achieved via end-to-end single-step implicit reasoning, which is simpler, more efficient, and easier to adopt. We propose QAGCN -- a Question-Aware Graph Convolutional Network (GCN)-based method that includes a novel GCN architecture with controlled question-dependent message propagation for the implicit reasoning. Extensive experiments have been conducted, where QAGCN achieved competitive and even superior performance compared to state-of-the-art explicit-reasoning methods.

While machine learning (ML) includes a valuable array of tools for analyzing biomedical data, significant time and expertise is required to assemble effective, rigorous, and unbiased pipelines. Automated ML (AutoML) tools seek to facilitate ML application by automating a subset of analysis pipeline elements. In this study we develop and validate a Simple, Transparent, End-to-end Automated Machine Learning Pipeline (STREAMLINE) and apply it to investigate the added utility of photography-based phenotypes for predicting obstructive sleep apnea (OSA); a common and underdiagnosed condition associated with a variety of health, economic, and safety consequences. STREAMLINE is designed to tackle biomedical binary classification tasks while adhering to best practices and accommodating complexity, scalability, reproducibility, customization, and model interpretation. Benchmarking analyses validated the efficacy of STREAMLINE across data simulations with increasingly complex patterns of association. Then we applied STREAMLINE to evaluate the utility of demographics (DEM), self-reported comorbidities (DX), symptoms (SYM), and photography-based craniofacial (CF) and intraoral (IO) anatomy measures in predicting any OSA or moderate/severe OSA using 3,111 participants from Sleep Apnea Global Interdisciplinary Consortium (SAGIC). OSA analyses identified a significant increase in ROC-AUC when adding CF to DEM+DX+SYM to predict moderate/severe OSA. A consistent but non-significant increase in PRC-AUC was observed with the addition of each subsequent feature set to predict any OSA, with CF and IO yielding minimal improvements. Application of STREAMLINE to OSA data suggests that CF features provide additional value in predicting moderate/severe OSA, but neither CF nor IO features meaningfully improved the prediction of any OSA beyond established demographics, comorbidity and symptom characteristics.

This study employed multimodal learning analytics (MMLA) to analyze behavioral dynamics during the ABCDE procedure in nursing education, focusing on gaze entropy, hand movement velocities, and proximity measures. Utilizing accelerometers and eye-tracking techniques, behaviorgrams were generated to depict various procedural phases. Results identified four primary phases characterized by distinct patterns of visual attention, hand movements, and proximity to the patient or instruments. The findings suggest that MMLA can offer valuable insights into procedural competence in medical education. This research underscores the potential of MMLA to provide detailed, objective evaluations of clinical procedures and their inherent complexities.

The paper provides a survey of the development of machine-learning techniques for video analysis. The survey provides a summary of the most popular deep learning methods used for human activity recognition. We discuss how popular architectures perform on standard datasets and highlight the differences from real-life datasets dominated by multiple activities performed by multiple participants over long periods. For real-life datasets, we describe the use of low-parameter models (with 200X or 1,000X fewer parameters) that are trained to detect a single activity after the relevant objects have been successfully detected. Our survey then turns to a summary of machine learning methods that are specifically developed for working with a small number of labeled video samples. Our goal here is to describe modern techniques that are specifically designed so as to minimize the amount of ground truth that is needed for training and testing video analysis systems. We provide summaries of the development of self-supervised learning, semi-supervised learning, active learning, and zero-shot learning for applications in video analysis. For each method, we provide representative examples.

Recent developments and research in modern machine learning have led to substantial improvements in the geospatial field. Although numerous deep learning models have been proposed, the majority of them have been developed on benchmark datasets that lack strong real-world relevance. Furthermore, the performance of many methods has already saturated on these datasets. We argue that shifting the focus towards a complementary data-centric perspective is necessary to achieve further improvements in accuracy, generalization ability, and real impact in end-user applications. This work presents a definition and precise categorization of automated data-centric learning approaches for geospatial data. It highlights the complementary role of data-centric learning with respect to model-centric in the larger machine learning deployment cycle. We review papers across the entire geospatial field and categorize them into different groups. A set of representative experiments shows concrete implementation examples. These examples provide concrete steps to act on geospatial data with data-centric machine learning approaches.

Large Vision Language Models (LVLMs) have demonstrated impressive zero-shot capabilities in various vision-language dialogue scenarios. However, the absence of fine-grained visual object detection hinders the model from understanding the details of images, leading to irreparable visual hallucinations and factual errors. In this paper, we propose Lyrics, a novel multi-modal pre-training and instruction fine-tuning paradigm that bootstraps vision-language alignment from fine-grained cross-modal collaboration. Building on the foundation of BLIP-2, Lyrics infuses local visual features extracted from a visual refiner that includes image tagging, object detection and semantic segmentation modules into the Querying Transformer, while on the text side, the language inputs equip the boundary boxes and tags derived from the visual refiner. We further introduce a two-stage training scheme, in which the pre-training stage bridges the modality gap through explicit and comprehensive vision-language alignment targets. During the instruction fine-tuning stage, we introduce semantic-aware visual feature extraction, a crucial method that enables the model to extract informative features from concrete visual objects. Our approach achieves strong performance on 13 held-out datasets across various vision-language tasks, and demonstrates promising multi-modal understanding and detailed depiction capabilities in real dialogue scenarios.

A major challenge in monocular 3D object detection is the limited diversity and quantity of objects in real datasets. While augmenting real scenes with virtual objects holds promise to improve both the diversity and quantity of the objects, it remains elusive due to the lack of an effective 3D object insertion method in complex real captured scenes. In this work, we study augmenting complex real indoor scenes with virtual objects for monocular 3D object detection. The main challenge is to automatically identify plausible physical properties for virtual assets (e.g., locations, appearances, sizes, etc.) in cluttered real scenes. To address this challenge, we propose a physically plausible indoor 3D object insertion approach to automatically copy virtual objects and paste them into real scenes. The resulting objects in scenes have 3D bounding boxes with plausible physical locations and appearances. In particular, our method first identifies physically feasible locations and poses for the inserted objects to prevent collisions with the existing room layout. Subsequently, it estimates spatially-varying illumination for the insertion location, enabling the immersive blending of the virtual objects into the original scene with plausible appearances and cast shadows. We show that our augmentation method significantly improves existing monocular 3D object models and achieves state-of-the-art performance. For the first time, we demonstrate that a physically plausible 3D object insertion, serving as a generative data augmentation technique, can lead to significant improvements for discriminative downstream tasks such as monocular 3D object detection. Project website: https://gyhandy.github.io/3D-Copy-Paste/

Fine-tuning large language models (LLMs) for downstream tasks can greatly improve model quality, however serving many different fine-tuned LLMs concurrently for users in multi-tenant environments is challenging. Dedicating GPU memory for each model is prohibitively expensive and naively swapping large model weights in and out of GPU memory is slow. Our key insight is that fine-tuned models can be quickly swapped in and out of GPU memory by extracting and compressing the delta between each model and its pre-trained base model. We propose DeltaZip, an LLM serving system that efficiently serves multiple full-parameter fine-tuned models concurrently by aggressively compressing model deltas by a factor of $6\times$ to $8\times$ while maintaining high model quality. DeltaZip increases serving throughput by $1.5\times$ to $3\times$ and improves SLO attainment compared to a vanilla HuggingFace serving system.

Typically, machine learning models are trained and evaluated without making any distinction between users (e.g, using traditional hold-out and cross-validation). However, this produces inaccurate performance metrics estimates in multi-user settings. That is, situations where the data were collected by multiple users with different characteristics (e.g., age, gender, height, etc.) which is very common in user computer interaction and medical applications. For these types of scenarios model evaluation strategies that provide better performance estimates have been proposed such as mixed, user-independent, user-dependent, and user-adaptive models. Although those strategies are better suited for multi-user systems, they are typically assessed with respect to performance metrics that capture the overall behavior of the models and do not provide any performance guarantees for individual predictions nor they provide any feedback about the predictions' uncertainty. In order to overcome those limitations, in this work we evaluated the conformal prediction framework in several multi-user settings. Conformal prediction is a model agnostic method that provides confidence guarantees on the predictions, thus, increasing the trustworthiness and robustness of the models. We conducted extensive experiments using different evaluation strategies and found significant differences in terms of conformal performance measures. We also proposed several visualizations based on matrices, graphs, and charts that capture different aspects of the resulting prediction sets.