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Review and experimental benchmarking of machine learning algorithms for efficient optimization of cold atom experiments

arXiv.org Artificial Intelligence

The generation of cold atom clouds is a complex process which involves the optimization of noisy data in high dimensional parameter spaces. Optimization can be challenging both in and especially outside of the lab due to lack of time, expertise, or access for lengthy manual optimization. In recent years, it was demonstrated that machine learning offers a solution since it can optimize high dimensional problems quickly, without knowledge of the experiment itself. In this paper we present results showing the benchmarking of nine different optimization techniques and implementations, alongside their ability to optimize a Rubidium (Rb) cold atom experiment. The investigations are performed on a 3D $^{87}$Rb molasses with 10 and 18 adjustable parameters, respectively, where the atom number obtained by absorption imaging was chosen as the test problem. We further compare the best performing optimizers under different effective noise conditions by reducing the Signal-to-Noise ratio of the images via adapting the atomic vapor pressure in the 2D+ MOT and the detection laser frequency stability.


Multi-label Learning from Privacy-Label

arXiv.org Artificial Intelligence

Multi-abel Learning (MLL) often involves the assignment of multiple relevant labels to each instance, which can lead to the leakage of sensitive information (such as smoking, diseases, etc.) about the instances. However, existing MLL suffer from failures in protection for sensitive information. In this paper, we propose a novel setting named Multi-Label Learning from Privacy-Label (MLLPL), which Concealing Labels via Privacy-Label Unit (CLPLU). Specifically, during the labeling phase, each privacy-label is randomly combined with a non-privacy label to form a Privacy-Label Unit (PLU). If any label within a PLU is positive, the unit is labeled as positive; otherwise, it is labeled negative, as shown in Figure 1. PLU ensures that only non-privacy labels are appear in the label set, while the privacy-labels remain concealed. Moreover, we further propose a Privacy-Label Unit Loss (PLUL) to learn the optimal classifier by minimizing the empirical risk of PLU. Experimental results on multiple benchmark datasets demonstrate the effectiveness and superiority of the proposed method.


1D-CNN Optimization for Non-contact Respiration Pattern Classification

arXiv.org Artificial Intelligence

In this study, we present a deep learning-based approach for time-series respiration data classification. The dataset contains regular breathing patterns as well as various forms of abnormal breathing, obtained through non-contact incoherent light-wave sensing (LWS) technology. Given the one-dimensional (1D) nature of the data, we employed a 1D convolutional neural network (1D-CNN) for classification purposes. Genetic algorithm was employed to optimize the 1D-CNN architecture to maximize classification accuracy. Addressing the computational complexity associated with training the 1D-CNN across multiple generations, we implemented transfer learning from a pre-trained model. This approach significantly reduced the computational time required for training, thereby enhancing the efficiency of the optimization process. This study contributes valuable insights into the potential applications of deep learning methodologies for enhancing respiratory anomaly detection through precise and efficient respiration classification.


Founder-GPT: Self-play to evaluate the Founder-Idea fit

arXiv.org Artificial Intelligence

This research introduces an innovative evaluation method for the "founder-idea" fit in early-stage startups, utilizing advanced large language model techniques to assess founders' profiles against their startup ideas to enhance decision-making. Embeddings, self-play, tree-of-thought, and critique-based refinement techniques show early promising results that each idea's success patterns are unique and they should be evaluated based on the context of the founder's background.


Unlocking Musculoskeletal Disorder Risk Factors: NLP-Based Classification and Mode-Based Ranking

arXiv.org Artificial Intelligence

This research delves into the intricate landscape of Musculoskeletal Disorder (MSD) risk factors, employing a novel fusion of Natural Language Processing (NLP) techniques and mode-based ranking methodologies. The primary objective is to advance the comprehension of MSD risk factors, their classification, and their relative severity, facilitating more targeted preventive and management interventions. The study utilizes eight diverse models, integrating pre-trained transformers, cosine similarity, and various distance metrics to classify risk factors into personal, biomechanical, workplace, psychological, and organizational classes. Key findings reveal that the BERT model with cosine similarity attains an overall accuracy of 28%, while the sentence transformer, coupled with Euclidean, Bray-Curtis, and Minkowski distances, achieves a flawless accuracy score of 100%. In tandem with the classification efforts, the research employs a mode-based ranking approach on survey data to discern the severity hierarchy of MSD risk factors. Intriguingly, the rankings align precisely with the previous literature, reaffirming the consistency and reliability of the approach. ``Working posture" emerges as the most severe risk factor, emphasizing the critical role of proper posture in preventing MSDs. The collective perceptions of survey participants underscore the significance of factors like "Job insecurity," "Effort reward imbalance," and "Poor employee facility" in contributing to MSD risks. The convergence of rankings provides actionable insights for organizations aiming to reduce the prevalence of MSDs. The study concludes with implications for targeted interventions, recommendations for improving workplace conditions, and avenues for future research.


FusionFrames: Efficient Architectural Aspects for Text-to-Video Generation Pipeline

arXiv.org Artificial Intelligence

Multimedia generation approaches occupy a prominent place in artificial intelligence research. Text-to-image models achieved high-quality results over the last few years. However, video synthesis methods recently started to develop. This paper presents a new two-stage latent diffusion text-to-video generation architecture based on the text-to-image diffusion model. The first stage concerns keyframes synthesis to figure the storyline of a video, while the second one is devoted to interpolation frames generation to make movements of the scene and objects smooth. We compare several temporal conditioning approaches for keyframes generation. The results show the advantage of using separate temporal blocks over temporal layers in terms of metrics reflecting video generation quality aspects and human preference. The design of our interpolation model significantly reduces computational costs compared to other masked frame interpolation approaches. Furthermore, we evaluate different configurations of MoVQ-based video decoding scheme to improve consistency and achieve higher PSNR, SSIM, MSE, and LPIPS scores. Finally, we compare our pipeline with existing solutions and achieve top-2 scores overall and top-1 among open-source solutions: CLIPSIM = 0.2976 and FVD = 433.054. Project page: https://ai-forever.github.io/kandinsky-video/


TacoGFN: Target Conditioned GFlowNet for Structure-Based Drug Design

arXiv.org Artificial Intelligence

We seek to automate the generation of drug-like compounds conditioned to specific protein pocket targets. Most current methods approximate the protein-molecule distribution of a finite dataset and, therefore struggle to generate molecules with significant binding improvement over the training dataset. We instead frame the pocket-conditioned molecular generation task as an RL problem and develop TacoGFN, a target conditional Generative Flow Network model. Our method is explicitly encouraged to generate molecules with desired properties as opposed to fitting on a pre-existing data distribution. To this end, we develop transformer-based docking score prediction to speed up docking score computation and propose TacoGFN to explore molecule space efficiently. Furthermore, we incorporate several rounds of active learning where generated samples are queried using a docking oracle to improve the docking score prediction. This approach allows us to accurately explore as much of the molecule landscape as we can afford computationally. Empirically, molecules generated using TacoGFN and its variants significantly outperform all baseline methods across every property (Docking score, QED, SA, Lipinski), while being orders of magnitude faster.


A Framework for Interpretability in Machine Learning for Medical Imaging

arXiv.org Artificial Intelligence

Interpretability for machine learning models in medical imaging (MLMI) is an important direction of research. However, there is a general sense of murkiness in what interpretability means. Why does the need for interpretability in MLMI arise? What goals does one actually seek to address when interpretability is needed? To answer these questions, we identify a need to formalize the goals and elements of interpretability in MLMI. By reasoning about real-world tasks and goals common in both medical image analysis and its intersection with machine learning, we identify five core elements of interpretability: localization, visual recognizability, physical attribution, model transparency, and actionability. From this, we arrive at a framework for interpretability in MLMI, which serves as a step-by-step guide to approaching interpretability in this context. Overall, this paper formalizes interpretability needs in the context of medical imaging, and our applied perspective clarifies concrete MLMI-specific goals and considerations in order to guide method design and improve real-world usage. Our goal is to provide practical and didactic information for model designers and practitioners, inspire developers of models in the medical imaging field to reason more deeply about what interpretability is achieving, and suggest future directions of interpretability research.


Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

arXiv.org Artificial Intelligence

The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.


Evaluating the Ripple Effects of Knowledge Editing in Language Models

arXiv.org Artificial Intelligence

Modern language models capture a large body of factual knowledge. However, some facts can be incorrectly induced or become obsolete over time, resulting in factually incorrect generations. This has led to the development of various editing methods that allow updating facts encoded by the model. Evaluation of these methods has primarily focused on testing whether an individual fact has been successfully injected, and if similar predictions for other subjects have not changed. Here we argue that such evaluation is limited, since injecting one fact (e.g. ``Jack Depp is the son of Johnny Depp'') introduces a ``ripple effect'' in the form of additional facts that the model needs to update (e.g.``Jack Depp is the sibling of Lily-Rose Depp''). To address this issue, we propose a novel set of evaluation criteria that consider the implications of an edit on related facts. Using these criteria, we then construct RippleEdits, a diagnostic benchmark of 5K factual edits, capturing a variety of types of ripple effects. We evaluate prominent editing methods on RippleEdits, showing that current methods fail to introduce consistent changes in the model's knowledge. In addition, we find that a simple in-context editing baseline obtains the best scores on our benchmark, suggesting a promising research direction for model editing.