Goto

Collaborating Authors

 South America


Scientific Large Language Models: A Survey on Biological & Chemical Domains

arXiv.org Artificial Intelligence

Large Language Models (LLMs) have emerged as a transformative power in enhancing natural language comprehension, representing a significant stride toward artificial general intelligence. The application of LLMs extends beyond conventional linguistic boundaries, encompassing specialized linguistic systems developed within various scientific disciplines. This growing interest has led to the advent of scientific LLMs, a novel subclass specifically engineered for facilitating scientific discovery. As a burgeoning area in the community of AI for Science, scientific LLMs warrant comprehensive exploration. However, a systematic and up-to-date survey introducing them is currently lacking. In this paper, we endeavor to methodically delineate the concept of "scientific language", whilst providing a thorough review of the latest advancements in scientific LLMs. Given the expansive realm of scientific disciplines, our analysis adopts a focused lens, concentrating on the biological and chemical domains. This includes an in-depth examination of LLMs for textual knowledge, small molecules, macromolecular proteins, genomic sequences, and their combinations, analyzing them in terms of model architectures, capabilities, datasets, and evaluation. Finally, we critically examine the prevailing challenges and point out promising research directions along with the advances of LLMs. By offering a comprehensive overview of technical developments in this field, this survey aspires to be an invaluable resource for researchers navigating the intricate landscape of scientific LLMs.


Data-Centric Evolution in Autonomous Driving: A Comprehensive Survey of Big Data System, Data Mining, and Closed-Loop Technologies

arXiv.org Artificial Intelligence

The aspiration of the next generation's autonomous driving (AD) technology relies on the dedicated integration and interaction among intelligent perception, prediction, planning, and low-level control. There has been a huge bottleneck regarding the upper bound of autonomous driving algorithm performance, a consensus from academia and industry believes that the key to surmount the bottleneck lies in data-centric autonomous driving technology. Recent advancement in AD simulation, closed-loop model training, and AD big data engine have gained some valuable experience. However, there is a lack of systematic knowledge and deep understanding regarding how to build efficient data-centric AD technology for AD algorithm self-evolution and better AD big data accumulation. To fill in the identified research gaps, this article will closely focus on reviewing the state-of-the-art data-driven autonomous driving technologies, with an emphasis on the comprehensive taxonomy of autonomous driving datasets characterized by milestone generations, key features, data acquisition settings, etc. Furthermore, we provide a systematic review of the existing benchmark closed-loop AD big data pipelines from the industrial frontier, including the procedure of closed-loop frameworks, key technologies, and empirical studies. Finally, the future directions, potential applications, limitations and concerns are discussed to arouse efforts from both academia and industry for promoting the further development of autonomous driving. The project repository is available at: https://github.com/LincanLi98/Awesome-Data-Centric-Autonomous-Driving.


Unraveling Attacks in Machine Learning-based IoT Ecosystems: A Survey and the Open Libraries Behind Them

arXiv.org Artificial Intelligence

The advent of the Internet of Things (IoT) has brought forth an era of unprecedented connectivity, with an estimated 80 billion smart devices expected to be in operation by the end of 2025. These devices facilitate a multitude of smart applications, enhancing the quality of life and efficiency across various domains. Machine Learning (ML) serves as a crucial technology, not only for analyzing IoT-generated data but also for diverse applications within the IoT ecosystem. For instance, ML finds utility in IoT device recognition, anomaly detection, and even in uncovering malicious activities. This paper embarks on a comprehensive exploration of the security threats arising from ML's integration into various facets of IoT, spanning various attack types including membership inference, adversarial evasion, reconstruction, property inference, model extraction, and poisoning attacks. Unlike previous studies, our work offers a holistic perspective, categorizing threats based on criteria such as adversary models, attack targets, and key security attributes (confidentiality, availability, and integrity). We delve into the underlying techniques of ML attacks in IoT environment, providing a critical evaluation of their mechanisms and impacts. Furthermore, our research thoroughly assesses 65 libraries, both author-contributed and third-party, evaluating their role in safeguarding model and data privacy. We emphasize the availability and usability of these libraries, aiming to arm the community with the necessary tools to bolster their defenses against the evolving threat landscape. Through our comprehensive review and analysis, this paper seeks to contribute to the ongoing discourse on ML-based IoT security, offering valuable insights and practical solutions to secure ML models and data in the rapidly expanding field of artificial intelligence in IoT.


Empirical and Experimental Insights into Machine Learning-Based Defect Classification in Semiconductor Wafers

arXiv.org Artificial Intelligence

This survey paper offers a comprehensive review of methodologies utilizing machine learning (ML) classification techniques for identifying wafer defects in semiconductor manufacturing. Despite the growing body of research demonstrating the effectiveness of ML in wafer defect identification, there is a noticeable absence of comprehensive reviews on this subject. This survey attempts to fill this void by amalgamating available literature and providing an in-depth analysis of the advantages, limitations, and potential applications of various ML classification algorithms in the realm of wafer defect detection. An innovative taxonomy of methodologies that we present provides a detailed classification of algorithms into more refined categories and techniques. This taxonomy follows a three-tier structure, starting from broad methodology categories and ending with specific techniques. It aids researchers in comprehending the complex relationships between different algorithms and their techniques. We employ a rigorous empirical and experimental evaluation to rank these varying techniques. For the empirical evaluation, we assess techniques based on a set of five criteria. The experimental evaluation ranks the algorithms employing the same techniques, sub-categories, and categories. Also the paper illuminates the future prospects of ML classification techniques for wafer defect identification, underscoring potential advancements and opportunities for further research in this field


The Lattice Overparametrization Paradigm for the Machine Learning of Lattice Operators

arXiv.org Artificial Intelligence

The machine learning of lattice operators has three possible bottlenecks. From a statistical standpoint, it is necessary to design a constrained class of operators based on prior information with low bias, and low complexity relative to the sample size. From a computational perspective, there should be an efficient algorithm to minimize an empirical error over the class. From an understanding point of view, the properties of the learned operator need to be derived, so its behavior can be theoretically understood. The statistical bottleneck can be overcome due to the rich literature about the representation of lattice operators, but there is no general learning algorithm for them. In this paper, we discuss a learning paradigm in which, by overparametrizing a class via elements in a lattice, an algorithm for minimizing functions in a lattice is applied to learn. We present the stochastic lattice descent algorithm as a general algorithm to learn on constrained classes of operators as long as a lattice overparametrization of it is fixed, and we discuss previous works which are proves of concept. Moreover, if there are algorithms to compute the basis of an operator from its overparametrization, then its properties can be deduced and the understanding bottleneck is also overcome. This learning paradigm has three properties that modern methods based on neural networks lack: control, transparency and interpretability. Nowadays, there is an increasing demand for methods with these characteristics, and we believe that mathematical morphology is in a unique position to supply them. The lattice overparametrization paradigm could be a missing piece for it to achieve its full potential within modern machine learning.


TraCE: Trajectory Counterfactual Explanation Scores

arXiv.org Artificial Intelligence

Counterfactual explanations, and their associated algorithmic recourse, are typically leveraged to understand, explain, and potentially alter a prediction coming from a black-box classifier. In this paper, we propose to extend the use of counterfactuals to evaluate progress in sequential decision making tasks. To this end, we introduce a model-agnostic modular framework, TraCE (Trajectory Counterfactual Explanation) scores, which is able to distill and condense progress in highly complex scenarios into a single value. We demonstrate TraCE's utility across domains by showcasing its main properties in two case studies spanning healthcare and climate change.


Revisiting Active Learning in the Era of Vision Foundation Models

arXiv.org Artificial Intelligence

Foundation vision or vision-language models are trained on large unlabeled or noisy data and learn robust representations that can achieve impressive zero- or few-shot performance on diverse tasks. Given these properties, they are a natural fit for active learning (AL), which aims to maximize labeling efficiency, but the full potential of foundation models has not been explored in the context of AL, specifically in the low-budget regime. In this work, we evaluate how foundation models influence three critical components of effective AL, namely, 1) initial labeled pool selection, 2) ensuring diverse sampling, and 3) the trade-off between representative and uncertainty sampling. We systematically study how the robust representations of foundation models (DINOv2, OpenCLIP) challenge existing findings in active learning. Our observations inform the principled construction of a new simple and elegant AL strategy that balances uncertainty estimated via dropout with sample diversity. We extensively test our strategy on many challenging image classification benchmarks, including natural images as well as out-of-domain biomedical images that are relatively understudied in the AL literature. Source code will be made available.


Modeling and Optimization of Epidemiological Control Policies Through Reinforcement Learning

arXiv.org Artificial Intelligence

Pandemics involve the high transmission of a disease that impacts global and local health and economic patterns. The impact of a pandemic can be minimized by enforcing certain restrictions on a community. However, while minimizing infection and death rates, these restrictions can also lead to economic crises. Epidemiological models help propose pandemic control strategies based on non-pharmaceutical interventions such as social distancing, curfews, and lockdowns, reducing the economic impact of these restrictions. However, designing manual control strategies while considering disease spread and economic status is non-trivial. Optimal strategies can be designed through multi-objective reinforcement learning (MORL) models, which demonstrate how restrictions can be used to optimize the outcome of a pandemic. In this research, we utilized an epidemiological Susceptible, Exposed, Infected, Recovered, Deceased (SEIRD) model: a compartmental model for virtually simulating a pandemic day by day. We combined the SEIRD model with a deep double recurrent Q-network to train a reinforcement learning agent to enforce the optimal restriction on the SEIRD simulation based on a reward function. We tested two agents with unique reward functions and pandemic goals to obtain two strategies. The first agent placed long lockdowns to reduce the initial spread of the disease, followed by cyclical and shorter lockdowns to mitigate the resurgence of the disease. The second agent provided similar infection rates but an improved economy by implementing a 10-day lockdown and 20-day no-restriction cycle. This use of reinforcement learning and epidemiological modeling allowed for both economic and infection mitigation in multiple pandemic scenarios.


LLM on FHIR -- Demystifying Health Records

arXiv.org Artificial Intelligence

Objective: To enhance health literacy and accessibility of health information for a diverse patient population by developing a patient-centered artificial intelligence (AI) solution using large language models (LLMs) and Fast Healthcare Interoperability Resources (FHIR) application programming interfaces (APIs). Materials and Methods: The research involved developing LLM on FHIR, an open-source mobile application allowing users to interact with their health records using LLMs. The app is built on Stanford's Spezi ecosystem and uses OpenAI's GPT-4. A pilot study was conducted with the SyntheticMass patient dataset and evaluated by medical experts to assess the app's effectiveness in increasing health literacy. The evaluation focused on the accuracy, relevance, and understandability of the LLM's responses to common patient questions. Results: LLM on FHIR demonstrated varying but generally high degrees of accuracy and relevance in providing understandable health information to patients. The app effectively translated medical data into patient-friendly language and was able to adapt its responses to different patient profiles. However, challenges included variability in LLM responses and the need for precise filtering of health data. Discussion and Conclusion: LLMs offer significant potential in improving health literacy and making health records more accessible. LLM on FHIR, as a pioneering application in this field, demonstrates the feasibility and challenges of integrating LLMs into patient care. While promising, the implementation and pilot also highlight risks such as inconsistent responses and the importance of replicable output. Future directions include better resource identification mechanisms and executing LLMs on-device to enhance privacy and reduce costs.


Not My Voice! A Taxonomy of Ethical and Safety Harms of Speech Generators

arXiv.org Artificial Intelligence

The rapid and wide-scale adoption of AI to generate human speech poses a range of significant ethical and safety risks to society that need to be addressed. For example, a growing number of speech generation incidents are associated with swatting attacks in the United States, where anonymous perpetrators create synthetic voices that call police officers to close down schools and hospitals, or to violently gain access to innocent citizens' homes. Incidents like this demonstrate that multimodal generative AI risks and harms do not exist in isolation, but arise from the interactions of multiple stakeholders and technical AI systems. In this paper we analyse speech generation incidents to study how patterns of specific harms arise. We find that specific harms can be categorised according to the exposure of affected individuals, that is to say whether they are a subject of, interact with, suffer due to, or are excluded from speech generation systems. Similarly, specific harms are also a consequence of the motives of the creators and deployers of the systems. Based on these insights we propose a conceptual framework for modelling pathways to ethical and safety harms of AI, which we use to develop a taxonomy of harms of speech generators. Our relational approach captures the complexity of risks and harms in sociotechnical AI systems, and yields an extensible taxonomy that can support appropriate policy interventions and decision making for responsible multimodal model development and release of speech generators.