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Design of an basis-projected layer for sparse datasets in deep learning training using gc-ms spectra as a case study

arXiv.org Artificial Intelligence

Deep learning (DL) models encompass millions or even billions of parameters and learn complex patterns from big data. However, not all data are initially stored in a suitable formation to effectively train a DL model, e.g., gas chromatography-mass spectrometry (GC-MS) spectra and DNA sequence. These datasets commonly contain many zero values, and the sparse data formation causes difficulties in optimizing DL models. A DL module called the basis-projected layer (BPL) was proposed to mitigate the issue by transforming the sparse data into a dense representation. The transformed data is expected to facilitate the gradient calculation and finetuned process in a DL training process. The dataset, example of a sparse dataset, contained 362 specialty coffee odorant spectra detected from GC-MS. The BPL layer was placed at the beginning of the DL model. The tunable parameters in the layer were learnable projected axes that were the bases of a new representation space. The layer rotated these bases when its parameters were updated. When the number of the bases was the same as the original dimension, the increasing percentage of the F1 scores was 8.56%. Furthermore, when the number was set as 768 (the original dimension was 490), the increasing percentage of the F1 score was 11.49%. The layer not only maintained the model performance and even constructed a better representation space in analyzing sparse datasets.


LabelAId: Just-in-time AI Interventions for Improving Human Labeling Quality and Domain Knowledge in Crowdsourcing Systems

arXiv.org Artificial Intelligence

Crowdsourcing platforms have transformed distributed problem-solving, yet quality control remains a persistent challenge. Traditional quality control measures, such as prescreening workers and refining instructions, often focus solely on optimizing economic output. This paper explores just-in-time AI interventions to enhance both labeling quality and domain-specific knowledge among crowdworkers. We introduce LabelAId, an advanced inference model combining Programmatic Weak Supervision (PWS) with FT-Transformers to infer label correctness based on user behavior and domain knowledge. Our technical evaluation shows that our LabelAId pipeline consistently outperforms state-of-the-art ML baselines, improving mistake inference accuracy by 36.7% with 50 downstream samples. We then implemented LabelAId into Project Sidewalk, an open-source crowdsourcing platform for urban accessibility. A between-subjects study with 34 participants demonstrates that LabelAId significantly enhances label precision without compromising efficiency while also increasing labeler confidence. We discuss LabelAId's success factors, limitations, and its generalizability to other crowdsourced science domains.


On STPA for Distributed Development of Safe Autonomous Driving: An Interview Study

arXiv.org Artificial Intelligence

Safety analysis is used to identify hazards and build knowledge during the design phase of safety-relevant functions. This is especially true for complex AI-enabled and software intensive systems such as Autonomous Drive (AD). System-Theoretic Process Analysis (STPA) is a novel method applied in safety-related fields like defense and aerospace, which is also becoming popular in the automotive industry. However, STPA assumes prerequisites that are not fully valid in the automotive system engineering with distributed system development and multi-abstraction design levels. This would inhibit software developers from using STPA to analyze their software as part of a bigger system, resulting in a lack of traceability. This can be seen as a maintainability challenge in continuous development and deployment (DevOps). In this paper, STPA's different guidelines for the automotive industry, e.g. J31887/ISO21448/STPA handbook, are firstly compared to assess their applicability to the distributed development of complex AI-enabled systems like AD. Further, an approach to overcome the challenges of using STPA in a multi-level design context is proposed. By conducting an interview study with automotive industry experts for the development of AD, the challenges are validated and the effectiveness of the proposed approach is evaluated.


World Model on Million-Length Video And Language With Blockwise RingAttention

arXiv.org Artificial Intelligence

Current language models fall short in understanding aspects of the world not easily described in words, and struggle with complex, long-form tasks. Video sequences offer valuable temporal information absent in language and static images, making them attractive for joint modeling with language. Such models could develop a understanding of both human textual knowledge and the physical world, enabling broader AI capabilities for assisting humans. However, learning from millions of tokens of video and language sequences poses challenges due to memory constraints, computational complexity, and limited datasets. To address these challenges, we curate a large dataset of diverse videos and books, utilize the Blockwise RingAttention technique to scalably train on long sequences, and gradually increase context size from 4K to 1M tokens. This paper makes the following contributions: (a) Largest context size neural network: We train one of the largest context size transformers on long video and language sequences, setting new benchmarks in difficult retrieval tasks and long video understanding. (b) Solutions for overcoming vision-language training challenges, including using masked sequence packing for mixing different sequence lengths, loss weighting to balance language and vision, and model-generated QA dataset for long sequence chat. (c) A highly-optimized implementation with RingAttention, Blockwise Transformers, masked sequence packing, and other key features for training on millions-length multimodal sequences. (d) Fully open-sourced a family of 7B parameter models capable of processing long text documents (LWM-Text, LWM-Text-Chat) and videos (LWM, LWM-Chat) of over 1M tokens. This work paves the way for training on massive datasets of long video and language to develop understanding of both human knowledge and the multimodal world, and broader capabilities.


A Stability-based Validation Procedure for Differentially Private Machine Learning

Neural Information Processing Systems

Differential privacy is a cryptographically motivated definition of privacy which has gained considerable attention in the algorithms, machine-learning and datamining communities. While there has been an explosion of work on differentially private machine learning algorithms, a major barrier to achieving end-to-end differential privacy in practical machine learning applications is the lack of an effective procedure for differentially private parameter tuning, or, determining the parameter value, such as a bin size in a histogram, or a regularization parameter, that is suitable for a particular application. In this paper, we introduce a generic validation procedure for differentially private machine learning algorithms that apply when a certain stability condition holds on the training algorithm and the validation performance metric. The training data size and the privacy budget used for training in our procedure is independent of the number of parameter values searched over. We apply our generic procedure to two fundamental tasks in statistics and machine-learning - training a regularized linear classifier and building a histogram density estimator that result in end-toend differentially private solutions for these problems.


Speedup Matrix Completion with Side Information Application to Multi Label Learning

Neural Information Processing Systems

In many real tasks, side information in addition to the observed entries is often available. In this work, we develop a novel theory of matrix completion that explicitly explore the side information to reduce the requirement on the number of observed entries. We show that, under appropriate conditions, with the assistance of side information matrices, the number of observed entries needed for a perfect recovery of matrix M can be dramatically reduced to O(ln n). We demonstrate the effectiveness of the proposed approach for matrix completion in transductive incomplete multi-label learning.


Summary Statistics for Partitionings and Feature Allocations

Neural Information Processing Systems

Infinite mixture models are commonly used for clustering. One can sample from the posterior of mixture assignments by Monte Carlo methods or find its maximum a posteriori solution by optimization. However, in some problems the posterior is diffuse and it is hard to interpret the sampled partitionings. In this paper, we introduce novel statistics based on block sizes for representing sample sets of partitionings and feature allocations. We develop an element-based definition of entropy to quantify segmentation among their elements. Then we propose a simple algorithm called entropy agglomeration (EA) to summarize and visualize this information. Experiments on various infinite mixture posteriors as well as a feature allocation dataset demonstrate that the proposed statistics are useful in practice.


b51a15f382ac914391a58850ab343b00-Reviews.html

Neural Information Processing Systems

The authors perform an analysis of "Hogwild" parallel Gibbs sampling for Gaussian distributions and show a connection between Gauss-Seidel / Jacobi and the Hogwild routine. They exploit this connection to show conditions for when this parallel Gibbs sampling process converges to the correct mean, and they are also able to make statements about the covariances of the system. I enjoyed reading the connection between Gauss-Seidel and Gauss-Jacobi and parallel Gaussian Gibbs sampling and find that this type of analysis is very useful for the NIPS community as parallel Gibbs sampling has received relatively little theoretical attention. A few comments: 1) I guess for the simple case of Gaussians, parallel Gibbs sampling is overkill as one can just directly obtain samples quickly for any multivariate Gaussian (but of course it is useful for analysis purposes). It would be nice to point this out (not sure if I agree with the sentiment in line 69) and also to make a few statements about how this analysis could also be applied to non-Gaussian cases. It seems that for a given iteration t, the same set of v samples would have to be globally shared across all processors for this method to work (e.g., Eq. 4)?


Analyzing Hogwild Parallel Gaussian Gibbs Sampling

Neural Information Processing Systems

Sampling inference methods are computationally difficult to scale for many models in part because global dependencies can reduce opportunities for parallel computation. Without strict conditional independence structure among variables, standard Gibbs sampling theory requires sample updates to be performed sequentially, even if dependence between most variables is not strong. Empirical work has shown that some models can be sampled effectively by going "Hogwild" and simply running Gibbs updates in parallel with only periodic global communication, but the successes and limitations of such a strategy are not well understood. As a step towards such an understanding, we study the Hogwild Gibbs sampling strategy in the context of Gaussian distributions. We develop a framework which provides convergence conditions and error bounds along with simple proofs and connections to methods in numerical linear algebra. In particular, we show that if the Gaussian precision matrix is generalized diagonally dominant, then any Hogwild Gibbs sampler, with any update schedule or allocation of variables to processors, yields a stable sampling process with the correct sample mean.


Nonparametric Multi-group Membership Model for Dynamic Networks

Neural Information Processing Systems

Statistical analysis of social networks and other relational data is becoming an increasingly important problem as the scope and availability of network data increases. Network data--such as the friendships in a social network--is often dynamic in a sense that relations between entities rise and decay over time. A fundamental problem in the analysis of such dynamic network data is to extract a summary of the common structure and the dynamics of the underlying relations between entities. Accurate models of structure and dynamics of network data have many applications. They allow us to predict missing relationships [20, 21, 23], recommend potential new relations [2], identify clusters and groups of nodes [1, 29], forecast future links [4, 9, 11, 24], and even predict group growth and longevity [15]. Here we present a new approach to modeling network dynamics by considering time-evolving interactions between groups of nodes as well as the arrival and departure dynamics of individual nodes to these groups. We develop a dynamic network model, Dynamic Multi-group Membership Graph Model, that identifies the birth and death of individual groups as well as the dynamics of node joining and leaving groups in order to explain changes in the underlying network linking structure. Our nonparametric model considers an infinite number of latent groups, where each node can belong to multiple groups simultaneously. We capture the evolution of individual node group memberships via a Factorial Hidden Markov model.