South America
Accurate Patient Alignment without Unnecessary Imaging Dose via Synthesizing Patient-specific 3D CT Images from 2D kV Images
Ding, Yuzhen, Holmes, Jason M., Feng, Hongying, Li, Baoxin, McGee, Lisa A., Rwigema, Jean-Claude M., Vora, Sujay A., Ma, Daniel J., Foote, Robert L., Patel, Samir H., Liu, Wei
In radiotherapy, 2D orthogonally projected kV images are used for patient alignment when 3D-on-board imaging(OBI) unavailable. But tumor visibility is constrained due to the projection of patient's anatomy onto a 2D plane, potentially leading to substantial setup errors. In treatment room with 3D-OBI such as cone beam CT(CBCT), the field of view(FOV) of CBCT is limited with unnecessarily high imaging dose, thus unfavorable for pediatric patients. A solution to this dilemma is to reconstruct 3D CT from kV images obtained at the treatment position. Here, we propose a dual-models framework built with hierarchical ViT blocks. Unlike a proof-of-concept approach, our framework considers kV images as the solo input and can synthesize accurate, full-size 3D CT in real time(within milliseconds). We demonstrate the feasibility of the proposed approach on 10 patients with head and neck (H&N) cancer using image quality(MAE: <45HU), dosimetrical accuracy(Gamma passing rate (2%/2mm/10%)>97%) and patient position uncertainty(shift error: <0.4mm). The proposed framework can generate accurate 3D CT faithfully mirroring real-time patient position, thus significantly improving patient setup accuracy, keeping imaging dose minimum, and maintaining treatment veracity.
BloodCell-Net: A lightweight convolutional neural network for the classification of all microscopic blood cell images of the human body
Mondal, Sohag Kumar, Talukder, Md. Simul Hasan, Aljaidi, Mohammad, Sulaiman, Rejwan Bin, Tushar, Md Mohiuddin Sarker, Alsuwaylimi, Amjad A
Blood cell classification and counting are vital for the diagnosis of various blood-related diseases, such as anemia, leukemia, and thrombocytopenia. The manual process of blood cell classification and counting is time-consuming, prone to errors, and labor-intensive. Therefore, we have proposed a DL based automated system for blood cell classification and counting from microscopic blood smear images. We classify total of nine types of blood cells, including Erythrocyte, Erythroblast, Neutrophil, Basophil, Eosinophil, Lymphocyte, Monocyte, Immature Granulocytes, and Platelet. Several preprocessing steps like image resizing, rescaling, contrast enhancement and augmentation are utilized. To segment the blood cells from the entire microscopic images, we employed the U-Net model. This segmentation technique aids in extracting the region of interest (ROI) by removing complex and noisy background elements. Both pixel-level metrics such as accuracy, precision, and sensitivity, and object-level evaluation metrics like Intersection over Union (IOU) and Dice coefficient are considered to comprehensively evaluate the performance of the U-Net model. The segmentation model achieved impressive performance metrics, including 98.23% accuracy, 98.40% precision, 98.25% sensitivity, 95.97% Intersection over Union (IOU), and 97.92% Dice coefficient. Subsequently, a watershed algorithm is applied to the segmented images to separate overlapped blood cells and extract individual cells. We have proposed a BloodCell-Net approach incorporated with custom light weight convolutional neural network (LWCNN) for classifying individual blood cells into nine types. Comprehensive evaluation of the classifier's performance is conducted using metrics including accuracy, precision, recall, and F1 score. The classifier achieved an average accuracy of 97.10%, precision of 97.19%, recall of 97.01%, and F1 score of 97.10%.
Forklift: An Extensible Neural Lifter
Armengol-Estapé, Jordi, Rocha, Rodrigo C. O., Woodruff, Jackson, Minervini, Pasquale, O'Boyle, Michael F. P.
The escalating demand to migrate legacy software across different Instruction Set Architectures (ISAs) has driven the development of assembly-to-assembly translators to map between their respective assembly languages. However, the development of these tools requires substantial engineering effort. State-of-the-art approaches use lifting, a technique where source assembly code is translated to an architecture-independent intermediate representation (IR) (for example, the LLVM IR) and use a pre-existing compiler to recompile the IR to the target ISA. However, the hand-written rules these lifters employ are sensitive to the particular compiler and optimization level used to generate the code and require significant engineering effort to support each new ISA. We propose Forklift, the first neural lifter that learns how to translate assembly to LLVM IR using a token-level encoder-decoder Transformer. We show how to incrementally add support to new ISAs by fine tuning the assembly encoder and freezing the IR decoder, improving the overall accuracy and efficiency. We collect millions of parallel LLVM IR, x86, ARM, and RISC-V programs across compilers and optimization levels to train Forklift and set up an input/output-based accuracy harness. We evaluate Forklift on two challenging benchmark suites and translate 2.5x more x86 programs than a state-of-the-art hand-written lifter and 4.4x more x86 programs than GPT-4 as well as enabling translation from new ISAs.
Are large language models superhuman chemists?
Mirza, Adrian, Alampara, Nawaf, Kunchapu, Sreekanth, Emoekabu, Benedict, Krishnan, Aswanth, Wilhelmi, Mara, Okereke, Macjonathan, Eberhardt, Juliane, Elahi, Amir Mohammad, Greiner, Maximilian, Holick, Caroline T., Gupta, Tanya, Asgari, Mehrdad, Glaubitz, Christina, Klepsch, Lea C., Köster, Yannik, Meyer, Jakob, Miret, Santiago, Hoffmann, Tim, Kreth, Fabian Alexander, Ringleb, Michael, Roesner, Nicole, Schubert, Ulrich S., Stafast, Leanne M., Wonanke, Dinga, Pieler, Michael, Schwaller, Philippe, Jablonka, Kevin Maik
Large language models (LLMs) have gained widespread interest due to their ability to process human language and perform tasks on which they have not been explicitly trained. This is relevant for the chemical sciences, which face the problem of small and diverse datasets that are frequently in the form of text. LLMs have shown promise in addressing these issues and are increasingly being harnessed to predict chemical properties, optimize reactions, and even design and conduct experiments autonomously. However, we still have only a very limited systematic understanding of the chemical reasoning capabilities of LLMs, which would be required to improve models and mitigate potential harms. Here, we introduce "ChemBench," an automated framework designed to rigorously evaluate the chemical knowledge and reasoning abilities of state-of-the-art LLMs against the expertise of human chemists. We curated more than 7,000 question-answer pairs for a wide array of subfields of the chemical sciences, evaluated leading open and closed-source LLMs, and found that the best models outperformed the best human chemists in our study on average. The models, however, struggle with some chemical reasoning tasks that are easy for human experts and provide overconfident, misleading predictions, such as about chemicals' safety profiles. These findings underscore the dual reality that, although LLMs demonstrate remarkable proficiency in chemical tasks, further research is critical to enhancing their safety and utility in chemical sciences. Our findings also indicate a need for adaptations to chemistry curricula and highlight the importance of continuing to develop evaluation frameworks to improve safe and useful LLMs.
Do LLMs Find Human Answers To Fact-Driven Questions Perplexing? A Case Study on Reddit
Seegmiller, Parker, Gatto, Joseph, Sharif, Omar, Basak, Madhusudan, Preum, Sarah Masud
Large language models (LLMs) have been shown to be proficient in correctly answering questions in the context of online discourse. However, the study of using LLMs to model human-like answers to fact-driven social media questions is still under-explored. In this work, we investigate how LLMs model the wide variety of human answers to fact-driven questions posed on several topic-specific Reddit communities, or subreddits. We collect and release a dataset of 409 fact-driven questions and 7,534 diverse, human-rated answers from 15 r/Ask{Topic} communities across 3 categories: profession, social identity, and geographic location. We find that LLMs are considerably better at modeling highly-rated human answers to such questions, as opposed to poorly-rated human answers. We present several directions for future research based on our initial findings.
Privacy Backdoors: Enhancing Membership Inference through Poisoning Pre-trained Models
Wen, Yuxin, Marchyok, Leo, Hong, Sanghyun, Geiping, Jonas, Goldstein, Tom, Carlini, Nicholas
It is commonplace to produce application-specific models by fine-tuning large pre-trained models using a small bespoke dataset. The widespread availability of foundation model checkpoints on the web poses considerable risks, including the vulnerability to backdoor attacks. In this paper, we unveil a new vulnerability: the privacy backdoor attack. This black-box privacy attack aims to amplify the privacy leakage that arises when fine-tuning a model: when a victim fine-tunes a backdoored model, their training data will be leaked at a significantly higher rate than if they had fine-tuned a typical model. We conduct extensive experiments on various datasets and models, including both vision-language models (CLIP) and large language models, demonstrating the broad applicability and effectiveness of such an attack. Additionally, we carry out multiple ablation studies with different fine-tuning methods and inference strategies to thoroughly analyze this new threat. Our findings highlight a critical privacy concern within the machine learning community and call for a reevaluation of safety protocols in the use of open-source pre-trained models.
mChartQA: A universal benchmark for multimodal Chart Question Answer based on Vision-Language Alignment and Reasoning
Wei, Jingxuan, Xu, Nan, Chang, Guiyong, Luo, Yin, Yu, BiHui, Guo, Ruifeng
The goal of multimodal chart question answering is to automatically answer a natural language question about a chart to facilitate visual data analysis (Hoque et al., 2022), where the ability to understand and interact with visual data is essential (Masry et al., 2022). It has emerged as a crucial intersection of computer vision and natural language processing, addressing the growing demand for intelligent systems capable of interpreting complex visual data in charts (Masry et al., 2022). Beyond its general applications, multimodal chart question-answering plays a pivotal role in sectors requiring precise and rapid analysis of visual data. In the financial domain, it is indispensable for tasks such as financial report analysis (Wang et al., 2023a), decision support (Kafle et al., 2020), invoice parsing (Gerling and Lessmann, 2023), and contract review (Jie et al., 2023). Similarly, in the medical field, it significantly contributes to the digitization of patient records (Xu et al., 2021), medical insurance review (Meskó, 2023), diagnostic assistance (Othmani and Zeghina, 2022), and quality control (Schilcher et al., 2024) of medical records. Due to the richness and ambiguities of natural language and complex visual reasoning, multimodal chart question answering task requires to predict the answer in the intersection of information visualization, natural language processing, and human computer interactions (Hoque et al., 2022). Early approaches apply natural language processing techniques by largely depending on heuristics or grammarbased parsing techniques (Setlur et al., 2016; Srinivasan and Stasko, 2017; Hoque et al., 2017; Gao et al., 2015). Thanks to insufficient processing of complex linguistic phenomena, over-reliance on grammatical rules, and limited depth of understanding natural language, deep learning models have been introduced for understanding natural language queries about visualizations (Chaudhry et al., 2020; Singh and Shekhar, 2020; Reddy et al., 2019).
Effectively Prompting Small-sized Language Models for Cross-lingual Tasks via Winning Tickets
Current soft prompt methods yield limited performance when applied to small-sized models (fewer than a billion parameters). Deep prompt-tuning, which entails prepending parameters in each layer for enhanced efficacy, presents a solution for prompting small-sized models, albeit requiring carefully designed implementation. In this paper, we introduce the Lottery Ticket Prompt-learning (LTP) framework that integrates winning tickets with soft prompts. The LTP offers a simpler implementation and requires only a one-time execution. We demonstrate LTP on cross-lingual tasks, where prior works rely on external tools like human-designed multilingual templates and bilingual dictionaries, which may not be feasible in a low-resource regime. Specifically, we select a subset of parameters that have been changed the most during the fine-tuning with the Masked Language Modeling objective. Then, we prepend soft prompts to the original pre-trained language model and only update the selected parameters together with prompt-related parameters when adapting to the downstream tasks. We verify the effectiveness of our LTP framework on cross-lingual tasks, specifically targeting low-resource languages. Our approach outperforms the baselines by only updating 20\% of the original parameters.
Large Language Models are Capable of Offering Cognitive Reappraisal, if Guided
Zhan, Hongli, Zheng, Allen, Lee, Yoon Kyung, Suh, Jina, Li, Junyi Jessy, Ong, Desmond C.
Large language models (LLMs) have offered new opportunities for emotional support, and recent work has shown that they can produce empathic responses to people in distress. However, long-term mental well-being requires emotional self-regulation, where a one-time empathic response falls short. This work takes a first step by engaging with cognitive reappraisals, a strategy from psychology practitioners that uses language to targetedly change negative appraisals that an individual makes of the situation; such appraisals is known to sit at the root of human emotional experience. We hypothesize that psychologically grounded principles could enable such advanced psychology capabilities in LLMs, and design RESORT which consists of a series of reappraisal constitutions across multiple dimensions that can be used as LLM instructions. We conduct a first-of-its-kind expert evaluation (by clinical psychologists with M.S. or Ph.D. degrees) of an LLM's zero-shot ability to generate cognitive reappraisal responses to medium-length social media messages asking for support. This fine-grained evaluation showed that even LLMs at the 7B scale guided by RESORT are capable of generating empathic responses that can help users reappraise their situations.
What's in Your "Safe" Data?: Identifying Benign Data that Breaks Safety
He, Luxi, Xia, Mengzhou, Henderson, Peter
Current Large Language Models (LLMs), even those tuned for safety and alignment, are susceptible to jailbreaking. Some have found that just further fine-tuning an aligned model with benign data (i.e., data without harmful content) surprisingly leads to substantial degradation in safety. We delve into the data-centric aspects of why benign fine-tuning inadvertently contributes to jailbreaking. First, we represent fine-tuning data through two lenses: representation and gradient spaces. Furthermore, we propose a bi-directional anchoring method that prioritizes data points that are close to harmful examples and distant from benign ones. By doing so, our approach effectively identifies subsets of benign data that are more likely to degrade the model's safety after fine-tuning. Training on just 100 of these seemingly benign datapoints can lead to the fine-tuned model affirmatively responding to > 70% of tested harmful requests, compared to < 20% after fine-tuning on randomly selected data. We further find that selected data are often in the form of lists and bullet points, or math questions.