Large language models (LLMs) have manifested strong ability to generate codes for productive activities. However, current benchmarks for code synthesis, such as HumanEval, MBPP, and DS-1000, are predominantly oriented towards introductory tasks on algorithm and data science, insufficiently satisfying challenging requirements prevalent in real-world coding. To fill this gap, we propose NaturalCodeBench (NCB), a challenging code benchmark designed to mirror the complexity and variety of scenarios in real coding tasks. NCB comprises 402 high-quality problems in Python and Java, meticulously selected from natural user queries from online coding services, covering 6 different domains. Noting the extraordinary difficulty in creating testing cases for real-world queries, we also introduce a semi-automated pipeline to enhance the efficiency of test case construction. Comparing with manual solutions, it achieves an efficiency increase of more than 4 times. Our systematic experiments on 39 LLMs find that performance gaps on NCB between models with close HumanEval scores could still be significant, indicating a lack of focus on practical code synthesis scenarios or over-specified optimization on HumanEval. On the other hand, even the best-performing GPT-4 is still far from satisfying on NCB. The evaluation toolkit and development set are available at https://github.com/THUDM/NaturalCodeBench.

Objective: To report imaging protocol and scheduling variance in routine care of glioblastoma patients in order to demonstrate challenges of integrating deep-learning models in glioblastoma care pathways. Additionally, to understand the most common imaging studies and image contrasts to inform the development of potentially robust deep-learning models. Methods: MR imaging data were analysed from a random sample of five patients from the prospective cohort across five participating sites of the ZGBM consortium. Reported clinical and treatment data alongside DICOM header information were analysed to understand treatment pathway imaging schedules. Results: All sites perform all structural imaging at every stage in the pathway except for the presurgical study, where in some sites only contrast-enhanced T1-weighted imaging is performed. Diffusion MRI is the most common non-structural imaging type, performed at every site. Conclusion: The imaging protocol and scheduling varies across the UK, making it challenging to develop machine-learning models that could perform robustly at other centres. Structural imaging is performed most consistently across all centres. Advances in knowledge: Successful translation of deep-learning models will likely be based on structural post-treatment imaging unless there is significant effort made to standardise non-structural or peri-operative imaging protocols and schedules.

Conventional machine learning methods are predominantly designed to predict outcomes based on a single data type. However, practical applications may encompass data of diverse types, such as text, images, and audio. We introduce interpretable tensor fusion (InTense), a multimodal learning method for training neural networks to simultaneously learn multimodal data representations and their interpretable fusion. InTense can separately capture both linear combinations and multiplicative interactions of diverse data types, thereby disentangling higher-order interactions from the individual effects of each modality. InTense provides interpretability out of the box by assigning relevance scores to modalities and their associations. The approach is theoretically grounded and yields meaningful relevance scores on multiple synthetic and real-world datasets. Experiments on six real-world datasets show that InTense outperforms existing state-of-the-art multimodal interpretable approaches in terms of accuracy and interpretability.

The integration of deep learning based systems in clinical practice is often impeded by challenges rooted in limited and heterogeneous medical datasets. In addition, prioritization of marginal performance improvements on a few, narrowly scoped benchmarks over clinical applicability has slowed down meaningful algorithmic progress. This trend often results in excessive fine-tuning of existing methods to achieve state-of-the-art performance on selected datasets rather than fostering clinically relevant innovations. In response, this work presents a comprehensive benchmark for the MedMNIST+ database to diversify the evaluation landscape and conduct a thorough analysis of common convolutional neural networks (CNNs) and Transformer-based architectures, for medical image classification. Our evaluation encompasses various medical datasets, training methodologies, and input resolutions, aiming to reassess the strengths and limitations of widely used model variants. Our findings suggest that computationally efficient training schemes and modern foundation models hold promise in bridging the gap between expensive end-to-end training and more resource-refined approaches. Additionally, contrary to prevailing assumptions, we observe that higher resolutions may not consistently improve performance beyond a certain threshold, advocating for the use of lower resolutions, particularly in prototyping stages, to expedite processing. Notably, our analysis reaffirms the competitiveness of convolutional models compared to ViT-based architectures emphasizing the importance of comprehending the intrinsic capabilities of different model architectures. Moreover, we hope that our standardized evaluation framework will help enhance transparency, reproducibility, and comparability on the MedMNIST+ dataset collection as well as future research within the field. Code is available at https://github.com/sdoerrich97 .

Code-switching is a prevalent linguistic phenomenon in which multilingual individuals seamlessly alternate between languages. Despite its widespread use online and recent research trends in this area, research in code-switching presents unique challenges, primarily stemming from the scarcity of labelled data and available resources. In this study, we investigate how pre-trained Language Models handle code-switched text in three dimensions: a) the ability of PLMs to detect code-switched text, b) variations in the structural information that PLMs utilise to capture code-switched text, and c) the consistency of semantic information representation in code-switched text. To conduct a systematic and controlled evaluation of the language models in question, we create a novel dataset of well-formed naturalistic code-switched text along with parallel translations into the source languages. Our findings reveal that pre-trained language models are effective in generalising to code-switched text, shedding light on the abilities of these models to generalise representations to CS corpora.

Interventions targeting the representation space of language models (LMs) have emerged as an effective means to influence model behavior. Such methods are employed, for example, to eliminate or alter the encoding of demographic information such as gender within the model's representations and, in so doing, create a counterfactual representation. However, because the intervention operates within the representation space, understanding precisely what aspects of the text it modifies poses a challenge. In this paper, we give a method to convert representation counterfactuals into string counterfactuals. We demonstrate that this approach enables us to analyze the linguistic alterations corresponding to a given representation space intervention and to interpret the features utilized to encode a specific concept. Moreover, the resulting counterfactuals can be used to mitigate bias in classification through data augmentation.

Deep clustering incorporates embedding into clustering to find a lower-dimensional space appropriate for clustering. In this paper, we propose a novel deep clustering framework with self-supervision using pairwise similarities (DCSS). The proposed method consists of two successive phases. In the first phase, we propose to form hypersphere-like groups of similar data points, i.e. one hypersphere per cluster, employing an autoencoder that is trained using cluster-specific losses. The hyper-spheres are formed in the autoencoder's latent space. In the second phase, we propose to employ pairwise similarities to create a $K$-dimensional space that is capable of accommodating more complex cluster distributions, hence providing more accurate clustering performance. $K$ is the number of clusters. The autoencoder's latent space obtained in the first phase is used as the input of the second phase. The effectiveness of both phases is demonstrated on seven benchmark datasets by conducting a rigorous set of experiments.

Many clinical tasks require an understanding of specialized data, such as medical images and genomics, which is not typically found in general-purpose large multimodal models. Building upon Gemini's multimodal models, we develop several models within the new Med-Gemini family that inherit core capabilities of Gemini and are optimized for medical use via fine-tuning with 2D and 3D radiology, histopathology, ophthalmology, dermatology and genomic data. Med-Gemini-2D sets a new standard for AI-based chest X-ray (CXR) report generation based on expert evaluation, exceeding previous best results across two separate datasets by an absolute margin of 1% and 12%, where 57% and 96% of AI reports on normal cases, and 43% and 65% on abnormal cases, are evaluated as "equivalent or better" than the original radiologists' reports. We demonstrate the first ever large multimodal model-based report generation for 3D computed tomography (CT) volumes using Med-Gemini-3D, with 53% of AI reports considered clinically acceptable, although additional research is needed to meet expert radiologist reporting quality. Beyond report generation, Med-Gemini-2D surpasses the previous best performance in CXR visual question answering (VQA) and performs well in CXR classification and radiology VQA, exceeding SoTA or baselines on 17 of 20 tasks. In histopathology, ophthalmology, and dermatology image classification, Med-Gemini-2D surpasses baselines across 18 out of 20 tasks and approaches task-specific model performance. Beyond imaging, Med-Gemini-Polygenic outperforms the standard linear polygenic risk score-based approach for disease risk prediction and generalizes to genetically correlated diseases for which it has never been trained. Although further development and evaluation are necessary in the safety-critical medical domain, our results highlight the potential of Med-Gemini across a wide range of medical tasks.

Large Language Models (LLMs), with their remarkable ability to tackle challenging and unseen reasoning problems, hold immense potential for tabular learning, that is vital for many real-world applications. In this paper, we propose a novel in-context learning framework, FeatLLM, which employs LLMs as feature engineers to produce an input data set that is optimally suited for tabular predictions. The generated features are used to infer class likelihood with a simple downstream machine learning model, such as linear regression and yields high performance few-shot learning. The proposed FeatLLM framework only uses this simple predictive model with the discovered features at inference time. Compared to existing LLM-based approaches, FeatLLM eliminates the need to send queries to the LLM for each sample at inference time. Moreover, it merely requires API-level access to LLMs, and overcomes prompt size limitations. As demonstrated across numerous tabular datasets from a wide range of domains, FeatLLM generates high-quality rules, significantly (10% on average) outperforming alternatives such as TabLLM and STUNT.

Electrical impedance tomography (EIT) plays a crucial role in non-invasive imaging, with both medical and industrial applications. In this paper, we present three data-driven reconstruction methods for EIT imaging. These three approaches were originally submitted to the Kuopio tomography challenge 2023 (KTC2023). First, we introduce a post-processing approach, which achieved first place at KTC2023. Further, we present a fully learned and a conditional diffusion approach. All three methods are based on a similar neural network as a backbone and were trained using a synthetically generated data set, providing with an opportunity for a fair comparison of these different data-driven reconstruction methods.