In various scientific and engineering fields, the primary research areas have revolved around physics-based dynamical systems modeling and data-driven time series analysis. According to the embedding theory, dynamical systems and time series can be mutually transformed using observation functions and physical reconstruction techniques. Based on this, we propose Embedding Duality Theory, where the parameterized embedding layer essentially provides a linear estimation of the non-linear time series dynamics. This theory enables us to bypass the parameterized embedding layer and directly employ physical reconstruction techniques to acquire a data embedding representation. Utilizing physical priors results in a 10X reduction in parameters, a 3X increase in speed, and maximum performance boosts of 18% in expert, 22% in few-shot, and 53\% in zero-shot tasks without any hyper-parameter tuning. All methods are encapsulated as a plug-and-play module

We conducted controlled experimental bias audits for four versions of ChatGPT, which we asked to recommend an opening offer in salary negotiations for a new hire. We submitted 98,800 prompts to each version, systematically varying the employee's gender, university, and major, and tested prompts in voice of each side of the negotiation: the employee versus employer. We find ChatGPT as a multi-model platform is not robust and consistent enough to be trusted for such a task. We observed statistically significant salary offers when varying gender for all four models, although with smaller gaps than for other attributes tested. The largest gaps were different model versions and between the employee- vs employer-voiced prompts. We also observed substantial gaps when varying university and major, but many of the biases were not consistent across model versions. We tested for fictional and fraudulent universities and found wildly inconsistent results across cases and model versions. We make broader contributions to the AI/ML fairness literature. Our scenario and our experimental design differ from mainstream AI/ML auditing efforts in key ways. Bias audits typically test discrimination for protected classes like gender, which we contrast with testing non-protected classes of university and major. Asking for negotiation advice includes how aggressive one ought to be in a negotiation relative to known empirical salary distributions and scales, which is a deeply contextual and personalized task that has no objective ground truth to validate. These results raise concerns for the specific model versions we tested and ChatGPT as a multi-model platform in continuous development. Our epistemology does not permit us to definitively certify these models as either generally biased or unbiased on the attributes we test, but our study raises matters of concern for stakeholders to further investigate.

Reinforcement Learning from Human Feedback (RLHF) has emerged as a pivotal tool for aligning large language models (LLMs) with human preferences. Direct Preference Optimization (DPO), one of the most popular approaches, formulates RLHF as a policy optimization problem without explicitly estimating the reward function. It overcomes the stability and efficiency issues of two-step approaches, which typically involve first estimating the reward function and then optimizing the policy via proximal policy optimization (PPO). Since RLHF is essentially an optimization problem, and it is well-known that momentum techniques can accelerate optimization both theoretically and empirically, a natural question arises: Can RLHF be accelerated by momentum? This paper answers this question in the affirmative. In detail, we first show that the iterative preference optimization method can be viewed as a proximal point method. Based on this observation, we propose a general Accelerated Preference Optimization (APO) framework, which unifies many existing preference optimization algorithms and employs Nesterov's momentum technique to speed up the alignment of LLMs. Theoretically, we demonstrate that APO can achieve a faster convergence rate than the standard iterative preference optimization methods, including DPO and Self-Play Preference Optimization (SPPO). Empirically, we show the superiority of APO over DPO, iterative DPO, and other strong baselines for RLHF on the AlpacaEval 2.0 benchmark.

There has been a recent push of research on Transformer-based models for long-term time series forecasting, even though they are inherently difficult to interpret and explain. While there is a large body of work on interpretability methods for various domains and architectures, the interpretability of Transformer-based forecasting models remains largely unexplored. To address this gap, we develop a framework based on Concept Bottleneck Models to enforce interpretability of time series Transformers. We modify the training objective to encourage a model to develop representations similar to predefined interpretable concepts. In our experiments, we enforce similarity using Centered Kernel Alignment, and the predefined concepts include time features and an interpretable, autoregressive surrogate model (AR). We apply the framework to the Autoformer model, and present an in-depth analysis for a variety of benchmark tasks. We find that the model performance remains mostly unaffected, while the model shows much improved interpretability. Additionally, interpretable concepts become local, which makes the trained model easily intervenable. As a proof of concept, we demonstrate a successful intervention in the scenario of a time shift in the data, which eliminates the need to retrain.

Initially, Recurrent Neural Networks (RNNs) were employed for this task; however, their error accumulation issues led to the adoption of Transformers, leveraging attention mechanisms to mitigate these problems. Concurrently, the promising results of diffusion models in capturing original distributions have positioned them at the forefront of current research, often in conjunction with Transformers. In this paper, we propose replacing time-oriented Transformers with State-Space Models (SSM), which are better suited for temporal data modeling. Specifically, we utilize the latest SSM variant, S6, which incorporates attention-like mechanisms. By embedding S6 within Mamba blocks, we develop a model that integrates SSM, Graph Neural Networks, and node-oriented Transformers to achieve enhanced spatiotemporal representations. TIMBA achieves superior performance in almost all benchmark scenarios and performs comparably in others across a diverse range of missing value situations and three real-world datasets. We also evaluate how the performance of our model varies with different amounts of missing values and analyse its performance on downstream tasks. In addition, we provide the original code to replicate the results.

The rapid advancement of large language models (LLMs) has highlighted the need for robust evaluation frameworks that assess their core capabilities, such as reasoning, knowledge, and commonsense, leading to the inception of certain widely-used benchmark suites such as the H6 benchmark. However, these benchmark suites are primarily built for the English language, and there exists a lack thereof for under-represented languages, in terms of LLM development, such as Thai. On the other hand, developing LLMs for Thai should also include enhancing the cultural understanding as well as core capabilities. To address these dual challenge in Thai LLM research, we propose two key benchmarks: Thai-H6 and Thai Cultural and Linguistic Intelligence Benchmark (ThaiCLI). Through a thorough evaluation of various LLMs with multi-lingual capabilities, we provide a comprehensive analysis of the proposed benchmarks and how they contribute to Thai LLM development. Furthermore, we will make both the datasets and evaluation code publicly available to encourage further research and development for Thai LLMs.

This paper investigates the limitations of transformers for entity-tracking tasks in large language models. We identify a theoretical constraint, showing that transformers require at least $\log_2 (n+1)$ layers to handle entity tracking with $n$ state changes. To address this issue, we propose an efficient and frugal enhancement to the standard attention mechanism, enabling it to manage long-term dependencies more efficiently. By considering attention as an adjacency matrix, our model can track entity states with a single layer. Empirical results demonstrate significant improvements in entity tracking datasets while keeping competitive performance on standard natural language modeling. Our modified attention allows us to achieve the same performance with drastically fewer layers. Additionally, our enhanced mechanism reveals structured internal representations of attention. Extensive experiments on both toy and complex datasets validate our approach. Our contributions include theoretical insights, an improved attention mechanism, and empirical validation.

Biological tree analysis serves as a pivotal tool in uncovering the evolutionary and differentiation relationships among organisms, genes, and cells. Its applications span diverse fields including phylogenetics, developmental biology, ecology, and medicine. Traditional tree inference methods, while foundational in early studies, face increasing limitations in processing the large-scale, complex datasets generated by modern high-throughput technologies. Recent advances in deep learning offer promising solutions, providing enhanced data processing and pattern recognition capabilities. However, challenges remain, particularly in accurately representing the inherently discrete and non-Euclidean nature of biological trees. In this review, we first outline the key biological priors fundamental to phylogenetic and differentiation tree analyses, facilitating a deeper interdisciplinary understanding between deep learning researchers and biologists. We then systematically examine the commonly used data formats and databases, serving as a comprehensive resource for model testing and development. We provide a critical analysis of traditional tree generation methods, exploring their underlying biological assumptions, technical characteristics, and limitations. Current developments in deep learning-based tree generation are reviewed, highlighting both recent advancements and existing challenges. Furthermore, we discuss the diverse applications of biological trees across various biological domains. Finally, we propose potential future directions and trends in leveraging deep learning for biological tree research, aiming to guide further exploration and innovation in this field.

Recent work on fact-checking addresses a realistic setting where models incorporate evidence retrieved from the web to decide the veracity of claims. A bottleneck in this pipeline is in retrieving relevant evidence: traditional methods may surface documents directly related to a claim, but fact-checking complex claims requires more inferences. For instance, a document about how a vaccine was developed is relevant to addressing claims about what it might contain, even if it does not address them directly. We present Contrastive Fact-Checking Reranker (CFR), an improved retriever for this setting. By leveraging the AVeriTeC dataset, which annotates subquestions for claims with human written answers from evidence documents, we fine-tune Contriever with a contrastive objective based on multiple training signals, including distillation from GPT-4, evaluating subquestion answers, and gold labels in the dataset. We evaluate our model on both retrieval and end-to-end veracity judgments about claims. On the AVeriTeC dataset, we find a 6\% improvement in veracity classification accuracy. We also show our gains can be transferred to FEVER, ClaimDecomp, HotpotQA, and a synthetic dataset requiring retrievers to make inferences.

Recently, the Probabilistic Sentential Decision Diagram (PSDD) has been proposed as a framework for systematically inducing and learning distributions over structured objects, including combinatorial objects such as permutations and rankings, paths and matchings on a graph, etc. In this paper, we study the scalability of such models in the context of representing and learning distributions over routes on a map. In particular, we introduce the notion of a hierarchical route distribution and show how they can be leveraged to construct tractable PSDDs over route distributions, allowing them to scale to larger maps. We illustrate the utility of our model empirically, in a route prediction task, showing how accuracy can be increased significantly compared to Markov models.