Multilingual BERT (mBERT) has demonstrated considerable cross-lingual syntactic ability, whereby it enables effective zero-shot cross-lingual transfer of syntactic knowledge. The transfer is more successful between some languages, but it is not well understood what leads to this variation and whether it fairly reflects difference between languages. In this work, we investigate the distributions of grammatical relations induced from mBERT in the context of 24 typologically different languages. We demonstrate that the distance between the distributions of different languages is highly consistent with the syntactic difference in terms of linguistic formalisms. Such difference learnt via self-supervision plays a crucial role in the zero-shot transfer performance and can be predicted by variation in morphosyntactic properties between languages. These results suggest that mBERT properly encodes languages in a way consistent with linguistic diversity and provide insights into the mechanism of cross-lingual transfer.

Motivation: Accurately predicting the likelihood of interaction between two objects (compound-protein sequence, user-item, author-paper, etc.) is a fundamental problem in Computer Science. Current deep-learning models rely on learning accurate representations of the interacting objects. Importantly, relationships between the interacting objects, or features of the interaction, offer an opportunity to partition the data to create multi-views of the interacting objects. The resulting congruent and non-congruent views can then be exploited via contrastive learning techniques to learn enhanced representations of the objects. Results: We present a novel method, Contrastive Stratification for Interaction Prediction (CSI), to stratify (partition) a dataset in a manner that can be exploited via Contrastive Multiview Coding (CMC) to learn embeddings that maximize the mutual information across congruent data views. CSI assigns a key and multiple views to each data point, where data partitions under a particular key form congruent views of the data. We showcase the effectiveness of CSI by applying it to the compound-protein sequence interaction prediction problem, a pressing problem whose solution promises to expedite drug delivery (drugprotein interaction prediction), metabolic engineering and synthetic biology (compound-enzyme interaction prediction) applications. Comparing CSI with a baseline model that does not utilize data stratification and contrastive learning, and show gains in Average Precision ranging from 13.7% to 39% using compounds and sequences as keys across multiple drug-target and enzymatic datasets, and gains ranging from 16.9% to 63% using reaction features as keys across enzymatic datasets.

The core issue in semi-supervised learning (SSL) lies in how to effectively leverage unlabeled data, whereas most existing methods tend to put a great emphasis on the utilization of high-confidence samples yet seldom fully explore the usage of low-confidence samples. In this paper, we aim to utilize low-confidence samples in a novel way with our proposed mutex-based consistency regularization, namely MutexMatch. Specifically, the high-confidence samples are required to exactly predict "what it is" by conventional True-Positive Classifier, while the low-confidence samples are employed to achieve a simpler goal -- to predict with ease "what it is not" by True-Negative Classifier. In this sense, we not only mitigate the pseudo-labeling errors but also make full use of the low-confidence unlabeled data by consistency of dissimilarity degree. MutexMatch achieves superior performance on multiple benchmark datasets, i.e., CIFAR-10, CIFAR-100, SVHN, STL-10, mini-ImageNet and Tiny-ImageNet. More importantly, our method further shows superiority when the amount of labeled data is scarce, e.g., 92.23% accuracy with only 20 labeled data on CIFAR-10. Our code and model weights have been released at https://github.com/NJUyued/MutexMatch4SSL.

Drug-Drug interactions (DDIs) are considered as the unwanted side, causing patients irreparable side effects [1] due to the concurrent consumption of two or more drugs [2-4]. As a fundamental research issue in the field of molecular biology, DDIs has received great attention. The resources of molecular biology, such as research literature, structure diagrams, and interactive genes analyses, have the substantial increments [5-7]. Researchers are facing enormous amount of materials to review, which requires considerable energy to investigate and organize crucial information with difficulty. The achievements of Natural Language Processing (NLP) could accelerate this procedure and improve the reliability for their further research, in the meantime, the linguistics could take advantages of the large, well-curated resources as well [5], benefiting the both groups. Considering the importance of DDIs in humans health, industry and the economy, and the substantial amount of cost and time of experimental approaches [1, 8], it is appropriate to introduce the automatic methodologies into this field. In the work by Zhang et al. [9], they argue that Information Extraction (IE) applications, such as discovering DDIs, must move beyond a scenario where relevant information is coherently and explicitly stated within a single document.

Human linguistic capacity is often characterized by compositionality and the generalization it enables -- human learners can produce and comprehend novel complex expressions by composing known parts. Several benchmarks exploit distributional control across training and test to gauge compositional generalization, where certain lexical items only occur in limited contexts during training. While recent work using these benchmarks suggests that pretrained models achieve impressive generalization performance, we argue that exposure to pretraining data may break the aforementioned distributional control. Using the COGS benchmark of Kim and Linzen (2020), we test two modified evaluation setups that control for this issue: (1) substituting context-controlled lexical items with novel character sequences, and (2) substituting them with special tokens represented by novel embeddings. We find that both of these setups lead to lower generalization performance in T5 (Raffel et al., 2020), suggesting that previously reported results have been overestimated due to uncontrolled lexical exposure during pretraining. The performance degradation is more extreme with novel embeddings, and the degradation increases with the amount of pretraining data, highlighting an interesting case of inverse scaling.

Problem statement: Standardisation of AI fairness rules and benchmarks is challenging because AI fairness and other ethical requirements depend on multiple factors such as context, use case, type of the AI system, and so on. In this paper, we elaborate that the AI system is prone to biases at every stage of its lifecycle, from inception to its usage, and that all stages require due attention for mitigating AI bias. We need a standardised approach to handle AI fairness at every stage. Gap analysis: While AI fairness is a hot research topic, a holistic strategy for AI fairness is generally missing. Most researchers focus only on a few facets of AI model-building. Peer review shows excessive focus on biases in the datasets, fairness metrics, and algorithmic bias. In the process, other aspects affecting AI fairness get ignored. The solution proposed: We propose a comprehensive approach in the form of a novel seven-layer model, inspired by the Open System Interconnection (OSI) model, to standardise AI fairness handling. Despite the differences in the various aspects, most AI systems have similar model-building stages. The proposed model splits the AI system lifecycle into seven abstraction layers, each corresponding to a well-defined AI model-building or usage stage. We also provide checklists for each layer and deliberate on potential sources of bias in each layer and their mitigation methodologies. This work will facilitate layer-wise standardisation of AI fairness rules and benchmarking parameters.

Iris segmentation is the initial step to identify biometric of animals to establish a traceability system of livestock. In this study, we propose a novel deep learning framework for pixel-wise segmentation with minimum use of annotation labels using BovineAAEyes80 public dataset. In the experiment, U-Net with VGG16 backbone was selected as the best combination of encoder and decoder model, demonstrating a 99.50% accuracy and a 98.35% Dice coefficient score. Remarkably, the selected model accurately segmented corrupted images even without proper annotation data. This study contributes to the advancement of the iris segmentation and the development of a reliable DNNs training framework.

Global correlations are widely seen in human anatomical structures due to similarity across tissues and bones. These correlations are reflected in magnetic resonance imaging (MRI) scans as a result of close-range proton density and T1/T2 parameters. Furthermore, to achieve accelerated MRI, k-space data are undersampled which causes global aliasing artifacts. Convolutional neural network (CNN) models are widely utilized for accelerated MRI reconstruction, but those models are limited in capturing global correlations due to the intrinsic locality of the convolution operation. The self-attention-based transformer models are capable of capturing global correlations among image features, however, the current contributions of transformer models for MRI reconstruction are minute. The existing contributions mostly provide CNN-transformer hybrid solutions and rarely leverage the physics of MRI. In this paper, we propose a physics-based stand-alone (convolution free) transformer model titled, the Multi-head Cascaded Swin Transformers (McSTRA) for accelerated MRI reconstruction. McSTRA combines several interconnected MRI physics-related concepts with the transformer networks: it exploits global MR features via the shifted window self-attention mechanism; it extracts MR features belonging to different spectral components separately using a multi-head setup; it iterates between intermediate de-aliasing and k-space correction via a cascaded network with data consistency in k-space and intermediate loss computations; furthermore, we propose a novel positional embedding generation mechanism to guide self-attention utilizing the point spread function corresponding to the undersampling mask. Our model significantly outperforms state-of-the-art MRI reconstruction methods both visually and quantitatively while depicting improved resolution and removal of aliasing artifacts.

A critical step in sharing semantic content online is to map the structural data source to a public domain ontology. This problem is denoted as the Relational-To-Ontology Mapping Problem (Rel2Onto). A huge effort and expertise are required for manually modeling the semantics of data. Therefore, an automatic approach for learning the semantics of a data source is desirable. Most of the existing work studies the semantic annotation of source attributes. However, although critical, the research for automatically inferring the relationships between attributes is very limited. In this paper, we propose a novel method for semantically annotating structured data sources using machine learning, graph matching and modified frequent subgraph mining to amend the candidate model. In our work, Knowledge graph is used as prior knowledge. Our evaluation shows that our approach outperforms two state-of-the-art solutions in tricky cases where only a few semantic models are known.

Welcome to our December 2022 monthly digest, where you can catch up with any AIhub stories you may have missed, get the low-down on recent events, and much more. This month, we hear from best paper award winners at ICIP and NeurIPS, and find out more about teleoperation, multilingual translation, and quality-diversity algorithms. We also have exciting news, in the form of a new focus series. We're delighted to announce the launch of our new focus series on AI around the world, where we cover exciting applications of AI across the globe. To kick off the series, we spoke with Rose Nakasi.