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A Novel Approach to Prediction of the 3-Dimensional Structures of Protein Backbones by Neural Networks

Neural Information Processing Systems

Since Kendrew & Perutz solved the first protein structures, myoglobin and hemoglobin, and explained from the discovered structures how these proteins perform their function, it has been widely recognized that protein function is intimately linked with protein structure[l]. Within the last two decades X-ray crystallographers have solved the 3-dimensional (3D) structures of a steadily increasing number of proteins in the crystalline state, and recently 2D-NMR spectroscopy has emerged as an alternative method for small proteins in solution. Today approximately three hundred 3D structures have been solved by these methods, although only about half of them can be considered as truly different, and only around a hundred of them are solved at high resolution (that is, less than 2A). The number of protein sequences known today is well over 20,000, and this number seems to be growing at least one order of magnitude faster than the number of known 3D protein structures. Obviously, it is of great importance to develop tools that can predict structural aspects of proteins on the basis of knowledge acquired from known 3D structures.



Real-time autonomous robot navigation using VLSI neural networks

Neural Information Processing Systems

There have been very few demonstrations ofthe application ofVLSI neural networks to real world problems. Yet there are many signal processing, pattern recognition or optimization problems where a large number of competing hypotheses need to be explored in parallel, most often in real time. The massive parallelism of VLSI neural network devices, with one multiplier circuit per synapse, is ideally suited to such problems. In this paper, we present preliminary results from our design for a real time robot navigation system based on VLSI neural network modules.


A four neuron circuit accounts for change sensitive inhibition in salamander retina

Neural Information Processing Systems

In salamander retina, the response of On-Off ganglion cells to a central flash is reduced by movement in the receptive field surround. Through computer simulation of a 2-D model which takes into account their anatomical and physiological properties, we show that interactions between four neuron types (two bipolar and two amacrine) may be responsible for the generation and lateral conductance of this change sensitive inhibition. The model shows that the four neuron circuit can account for previously observed movement sensitive reductions in ganglion cell sensitivity and allows visualization and prediction of the spatiotemporal pattern of activity in change sensitive retinal cells.



Speech Recognition Using Connectionist Approaches

Neural Information Processing Systems

This paper is a summary of SPRINT project aims and results. The project focus on the use of neuro-computing techniques to tackle various problems that remain unsolved in speech recognition. First results concern the use of feedforward nets for phonetic units classification, isolated word recognition, and speaker adaptation.


From Speech Recognition to Spoken Language Understanding: The Development of the MIT SUMMIT and VOYAGER Systems

Neural Information Processing Systems

Spoken input to computers, however, has yet to pass the threshold of practicality. Despite some recent successful demonstrations, current speech recognition systems typically fall far short of human capabilities of continuous speech recognition with essentially unrestricted vocabulary and speakers, under adverse acoustic environments.


Connectionist Approaches to the Use of Markov Models for Speech Recognition

Neural Information Processing Systems

Previous work has shown the ability of Multilayer Perceptrons (MLPs) to estimate emission probabilities for Hidden Markov Models (HMMs). The advantages of a speech recognition system incorporating both MLPs and HMMs are the best discrimination and the ability to incorporate multiple sources of evidence (features, temporal context) without restrictive assumptions of distributions or statistical independence. This paper presents results on the speaker-dependent portion of DARPA's English language Resource Management database. Results support the previously reported utility of MLP probability estimation for continuous speech recognition. An additional approach we are pursuing is to use MLPs as nonlinear predictors for autoregressive HMMs. While this is shown to be more compatible with the HMM formalism, it still suffers from several limitations. This approach is generalized to take account of time correlation between successive observations, without any restrictive assumptions about the driving noise. 1 INTRODUCTION We have been working on continuous speech recognition using moderately large vocabularies (1000 words) [1,2].


ART2/BP architecture for adaptive estimation of dynamic processes

Neural Information Processing Systems

The goal has been to construct a supervised artificial neural network that learns incrementally an unknown mapping. As a result a network consisting of a combination of ART2 and backpropagation is proposed and is called an "ART2/BP" network. The ART2 network is used to build and focus a supervised backpropagation network. The ART2/BP network has the advantage of being able to dynamically expand itself in response to input patterns containing new information. Simulation results show that the ART2/BP network outperforms a classical maximum likelihood method for the estimation of a discrete dynamic and nonlinear transfer function.


Phase-coupling in Two-Dimensional Networks of Interacting Oscillators

Neural Information Processing Systems

Coherent oscillatory activity in large networks of biological or artificial neural units may be a useful mechanism for coding information pertaining to a single perceptual object or for detailing regularities within a data set. We consider the dynamics of a large array of simple coupled oscillators under a variety of connection schemes. Of particular interest is the rapid and robust phase-locking that results from a "sparse" scheme where each oscillator is strongly coupled to a tiny, randomly selected, subset of its neighbors.