Fisher linear discriminant analysis (LDA) can be sensitive to the problem data. Robust Fisher LDA can systematically alleviate the sensitivity problem by explicitly incorporating a model of data uncertainty in a classification problem and optimizing for the worst-case scenario under this model. The main contribution of this paper is show that with general convex uncertainty models on the problem data, robust Fisher LDA can be carried out using convex optimization. For a certain type of product form uncertainty model, robust Fisher LDA can be carried out at a cost comparable to standard Fisher LDA. The method is demonstrated with some numerical examples. Finally, we show how to extend these results to robust kernel Fisher discriminant analysis, i.e., robust Fisher LDA in a high dimensional feature space.

Although nonparametric tests have already been proposed for that purpose, statistical significance tests for nonstandard measures (different from the classification error) are less often used in the literature. This paper is an attempt at empirically verifying how these tests compare with more classical tests, on various conditions. More precisely, using a very large dataset to estimate the whole "population", we analyzed the behavior of several statistical test, varying the class unbalance, the compared models, the performance measure, and the sample size. The main result is that providing big enough evaluation sets nonparametric tests are relatively reliable in all conditions.

In this paper we propose a new basis selection criterion for building sparse GP regression models that provides promising gains in accuracy as well as efficiency over previous methods. Our algorithm is much faster than that of Smola and Bartlett, while, in generalization it greatly outperforms the information gain approach proposed by Seeger et al, especially on the quality of predictive distributions.

For this purpose, we propose a stochastic procedure, the mirror descent, which performs gradient descent in the dual space. The generated estimates are additionally averaged in a recursive fashion with specific weights. Mirror descent algorithms have been developed in different contexts and they are known to be particularly efficient in high dimensional problems. Moreover their implementation is adapted to the online setting. The main result of the paper is the upper bound on the convergence rate for the generalization error.

Integrate-and-Fire-type models are usually criticized because of their simplicity. On the other hand, the Integrate-and-Fire model is the basis of most of the theoretical studies on spiking neuron models. Here, we develop a sequential procedure to quantitatively evaluate an equivalent Integrate-and-Fire-type model based on intracellular recordings of cortical pyramidal neurons. We find that the resulting effective model is sufficient to predict the spike train of the real pyramidal neuron with high accuracy. In in vivo-like regimes, predicted and recorded traces are almost indistinguishable and a significant part of the spikes can be predicted at the correct timing. Slow processes like spike-frequency adaptation are shown to be a key feature in this context since they are necessary for the model to connect between different driving regimes.

We introduce a new model of genetic diversity which summarizes a large input dataset into an epitome, a short sequence or a small set of short sequences of probability distributions capturing many overlapping subsequences from the dataset. The epitome as a representation has already been used in modeling real-valued signals, such as images and audio. The discrete sequence model we introduce in this paper targets applications in genetics, from multiple alignment to recombination and mutation inference. In our experiments, we concentrate on modeling the diversity of HIV where the epitome emerges as a natural model for producing relatively small vaccines covering a large number of immune system targets known as epitopes. Our experiments show that the epitome includes more epitopes than other vaccine designs of similar length, including cocktails of consensus strains, phylogenetic tree centers, and observed strains. We also discuss epitome designs that take into account uncertainty about T-cell cross reactivity and epitope presentation. In our experiments, we find that vaccine optimization is fairly robust to these uncertainties.

Spectral clustering enjoys its success in both data clustering and semisupervised learning. But, most spectral clustering algorithms cannot handle multi-class clustering problems directly. Additional strategies are needed to extend spectral clustering algorithms to multi-class clustering problems. Furthermore, most spectral clustering algorithms employ hard cluster membership, which is likely to be trapped by the local optimum. In this paper, we present a new spectral clustering algorithm, named "Soft Cut". It improves the normalized cut algorithm by introducing soft membership, and can be efficiently computed using a bound optimization algorithm. Our experiments with a variety of datasets have shown the promising performance of the proposed clustering algorithm.

A standard method to obtain stochastic models for symbolic time series is to train state-emitting hidden Markov models (SE-HMMs) with the Baum-Welch algorithm. Based on observable operator models (OOMs), in the last few months a number of novel learning algorithms for similar purposes have been developed: (1,2) two versions of an "efficiency sharpening" (ES) algorithm, which iteratively improves the statistical efficiency of a sequence of OOM estimators, (3) a constrained gradient descent ML estimator for transition-emitting HMMs (TE-HMMs). We give an overview on these algorithms and compare them with SE-HMM/EM learning on synthetic and real-life data.

The concept of surprise is central to sensory processing, adaptation, learning, and attention. Yet, no widely-accepted mathematical theory currently exists to quantitatively characterize surprise elicited by a stimulus or event, for observers that range from single neurons to complex natural or engineered systems. We describe a formal Bayesian definition of surprise that is the only consistent formulation under minimal axiomatic assumptions. Surprise quantifies how data affects a natural or artificial observer, by measuring the difference between posterior and prior beliefs of the observer. Using this framework we measure the extent to which humans direct their gaze towards surprising items while watching television and video games. We find that subjects are strongly attracted towards surprising locations, with 72% of all human gaze shifts directed towards locations more surprising than the average, a figure which rises to 84% when considering only gaze targets simultaneously selected by all subjects.

Multiple visual cues are used by the visual system to analyze a scene; achromatic cues include luminance, texture, contrast and motion. Singlecell recordings have shown that the mammalian visual cortex contains neurons that respond similarly to scene structure (e.g., orientation of a boundary), regardless of the cue type conveying this information. This paper shows that cue-invariant response properties of simple-and complex-type cells can be learned from natural image data in an unsupervised manner. In order to do this, we also extend a previous conceptual model of cue invariance so that it can be applied to model simple-and complex-cell responses. Our results relate cue-invariant response properties to natural image statistics, thereby showing how the statistical modeling approach can be used to model processing beyond the elemental response properties visual neurons. This work also demonstrates how to learn, from natural image data, more sophisticated feature detectors than those based on changes in mean luminance, thereby paving the way for new data-driven approaches to image processing and computer vision.