In biological neurons, the timing of a spike depends on the timing of synaptic currents, in a way that is classically described by the Phase Response Curve. This has implications for temporal coding: an action potential that arrives on a synapse has an implicit meaning, that depends on the position of the postsynaptic neuron on the firing cycle. Here we show that this implicit code can be used to perform computations. Using theta neurons, we derive a spike-timing dependent learning rule from an error criterion. We demonstrate how to train an auto-encoder neural network using this rule.

Using extensions of linear algebra concepts to Reproducing Kernel Hilbert Spaces (RKHS), we define a unifying framework for random walk kernels on graphs.

Computational gene prediction using generative models has reached a plateau, with several groups converging to a generalized hidden Markov model (GHMM) incorporating phylogenetic models of nucleotide sequence evolution. Further improvements in gene calling accuracy are likely to come through new methods that incorporate additional data, both comparative and species specific. Conditional Random Fields (CRFs), which directly model the conditional probability P (y x) of a vector of hidden states conditioned on a set of observations, provide a unified framework for combining probabilistic and non-probabilistic information and have been shown to outperform HMMs on sequence labeling tasks in natural language processing. We describe the use of CRFs for comparative gene prediction. We implement a model that encapsulates both a phylogenetic-GHMM (our baseline comparative model) and additional non-probabilistic features. We tested our model on the genome sequence of the fungal human pathogen Cryptococcus neoformans.

Semi-supervised learning is more powerful than supervised learning by using both labeled and unlabeled data. In particular, the manifold regularization framework, together with kernel methods, leads to the Laplacian SVM (LapSVM) that has demonstrated state-of-the-art performance. However, the LapSVM solution typically involves kernel expansions of all the labeled and unlabeled examples, and is slow on testing. Moreover, existing semi-supervised learning methods, including the LapSVM, can only handle a small number of unlabeled examples. In this paper, we integrate manifold regularization with the core vector machine, which has been used for large-scale supervised and unsupervised learning. By using a sparsified manifold regularizer and formulating as a center-constrained minimum enclosing ball problem, the proposed method produces sparse solutions with low time and space complexities. Experimental results show that it is much faster than the LapSVM, and can handle a million unlabeled examples on a standard PC; while the LapSVM can only handle several thousand patterns.

This paper presents an algorithm for synthesis of human motion in specified styles. We use a theory of movement observation (Laban Movement Analysis) to describe movement styles as points in a multidimensional perceptual space. We cast the task of learning to synthesize desired movement styles as a regression problem: sequences generated via space-time interpolation of motion capture data are used to learn a nonlinear mapping between animation parameters and movement styles in perceptual space. We demonstrate that the learned model can apply a variety of motion styles to prerecorded motion sequences and it can extrapolate styles not originally included in the training data.

We propose a novel framework for the classification of single trial ElectroEncephaloGraphy (EEG), based on regularized logistic regression. Framed in this robust statistical framework no prior feature extraction or outlier removal is required.

We introduce a class of MPDs which greatly simplify Reinforcement Learning. They have discrete state spaces and continuous control spaces. The controls have the effect of rescaling the transition probabilities of an underlying Markov chain. A control cost penalizing KL divergence between controlled and uncontrolled transition probabilities makes the minimization problem convex, and allows analytical computation of the optimal controls given the optimal value function. An exponential transformation of the optimal value function makes the minimized Bellman equation linear.

Latent Dirichlet allocation (LDA) is a Bayesian network that has recently gained much popularity in applications ranging from document modeling to computer vision. Due to the large scale nature of these applications, current inference procedures like variational Bayes and Gibbs sampling have been found lacking. In this paper we propose the collapsed variational Bayesian inference algorithm for LDA, and show that it is computationally efficient, easy to implement and significantly more accurate than standard variational Bayesian inference for LDA.

In supervised learning there is a typical presumption that the training and test points are taken from the same distribution. In practice this assumption is commonly violated. The situations where the training and test data are from different distributions is called covariate shift. Recent work has examined techniques for dealing with covariate shift in terms of minimisation of generalisation error. As yet the literature lacks a Bayesian generative perspective on this problem. This paper tackles this issue for regression models. Recent work on covariate shift can be understood in terms of mixture regression. Using this view, we obtain a general approach to regression under covariate shift, which reproduces previous work as a special case. The main advantages of this new formulation over previous models for covariate shift are that we no longer need to presume the test and training densities are known, the regression and density estimation are combined into a single procedure, and previous methods are reproduced as special cases of this procedure, shedding light on the implicit assumptions the methods are making.

We establish a general oracle inequality for clipped approximate minimizers of regularized empirical risks and apply this inequality to support vector machine (SVM) type algorithms. We then show that for SVMs using Gaussian RBF kernels for classification this oracle inequality leads to learning rates that are faster than the ones established in [9]. Finally, we use our oracle inequality to show that a simple parameter selection approach based on a validation set can yield the same fast learning rates without knowing the noise exponents which were required to be known a-priori in [9].