By adopting Gaussian process priors a fully Bayesian solution to the problem of integrating possibly heterogeneous data sets within a classification setting is presented. Approximate inference schemes employing Variational & Expectation Propagation based methods are developed and rigorously assessed. We demonstrate our approach to integrating multiple data sets on a large scale protein fold prediction problem where we infer the optimal combinations of covariance functions and achieve state-of-the-art performance without resorting to any ad hoc parameter tuning and classifier combination.

In this paper we introduce and experiment with a framework for learning local perceptual distance functions for visual recognition. We learn a distance function for each training image as a combination of elementary distances between patch-based visual features. We apply these combined local distance functions to the tasks of image retrieval and classification of novel images. On the Caltech 101 object recognition benchmark, we achieve 60.3% mean recognition across classes using 15 training images per class, which is better than the best published performance by Zhang, et al.

Many computer aided diagnosis (CAD) problems can be best modelled as a multiple-instance learning (MIL) problem with unbalanced data: i.e., the training data typically consists of a few positive bags, and a very large number of negative instances. Existing MIL algorithms are much too computationally expensive for these datasets. We describe CH, a framework for learning a Convex Hull representation of multiple instances that is significantly faster than existing MIL algorithms. Our CH framework applies to any standard hyperplane-based learning algorithm, and for some algorithms, is guaranteed to find the global optimal solution. Experimental studies on two different CAD applications further demonstrate that the proposed algorithm significantly improves diagnostic accuracy when compared to both MIL and traditional classifiers. Although not designed for standard MIL problems (which have both positive and negative bags and relatively balanced datasets), comparisons against other MIL methods on benchmark problems also indicate that the proposed method is competitive with the state-of-the-art.

This paper proposes a new approach to model-based clustering under prior knowledge. The proposed formulation can be interpreted from two different angles: as penalized logistic regression, where the class labels are only indirectly observed (via the probability density of each class); as finite mixture learning under a grouping prior. To estimate the parameters of the proposed model, we derive a (generalized) EM algorithm with a closed-form E-step, in contrast with other recent approaches to semi-supervised probabilistic clustering which require Gibbs sampling or suboptimal shortcuts. We show that our approach is ideally suited for image segmentation: it avoids the combinatorial nature Markov random field priors, and opens the door to more sophisticated spatial priors (e.g., wavelet-based) in a simple and computationally efficient way. Finally, we extend our formulation to work in unsupervised, semi-supervised, or discriminative modes.

The standard Support Vector Machine formulation does not provide its user with the ability to explicitly control the number of support vectors used to define the generated classifier. We present a modified version of SVM that allows the user to set a budget parameter B and focuses on minimizing the loss attained by the B worst-classified examples while ignoring the remaining examples. This idea can be used to derive sparse versions of both L1-SVM and L2-SVM. Technically, we obtain these new SVM variants by replacing the 1-norm in the standard SVM formulation with various interpolation-norms. We also adapt the SMO optimization algorithm to our setting and report on some preliminary experimental results.

We consider the problem of learning accurate models from multiple sources of "nearby" data. Given distinct samples from multiple data sources and estimates of the dissimilarities between these sources, we provide a general theory of which samples should be used to learn models for each source. This theory is applicable in a broad decision-theoretic learning framework, and yields results for classification and regression generally, and for density estimation within the exponential family. A key component of our approach is the development of approximate triangle inequalities for expected loss, which may be of independent interest.

Clustering, or factoring of a document collection attempts to "explain" each observed document in terms of one or a small number of inferred prototypes. Prior work demonstrated that when links exist between documents in the corpus (as is the case with a collection of web pages or scientific papers), building a joint model of document contents and connections produces a better model than that built from contents or connections alone. Many problems arise when trying to apply these joint models to corpus at the scale of the World Wide Web, however; one of these is that the sheer overhead of representing a feature space on the order of billions of dimensions becomes impractical. We address this problem with a simple representational shift inspired by probabilistic relational models: instead of representing document linkage in terms of the identities of linking documents, we represent it by the explicit and inferred attributes of the linking documents. Several surprising results come with this shift: in addition to being computationally more tractable, the new model produces factors that more cleanly decompose the document collection. We discuss several variations on this model and show how some can be seen as exact generalizations of the PageRank algorithm.

Correlation between instances is often modelled via a kernel function using input attributes of the instances. Relational knowledge can further reveal additional pairwise correlations between variables of interest. In this paper, we develop a class of models which incorporates both reciprocal relational information and input attributes using Gaussian process techniques. This approach provides a novel nonparametric Bayesian framework with a data-dependent covariance function for supervised learning tasks. We also apply this framework to semi-supervised learning. Experimental results on several real world data sets verify the usefulness of this algorithm.

We consider the problem of constructing a function whose zero set is to represent a surface, given sample points with surface normal vectors. The contributions include a novel means of regularising multi-scale compactly supported basis functions that leads to the desirable properties previously only associated with fully supported bases, and show equivalence to a Gaussian process with modified covariance function. We also provide a regularisation framework for simpler and more direct treatment of surface normals, along with a corresponding generalisation of the representer theorem. We demonstrate the techniques on 3D problems of up to 14 million data points, as well as 4D time series data.

Cooperative competitive networks are believed to play a central role in cortical processing and have been shown to exhibit a wide set of useful computational properties. We propose a VLSI implementation of a spiking cooperative competitive network and show how it can perform context dependent computation both in the mean firing rate domain and in spike timing correlation space. In the mean rate case the network amplifies the activity of neurons belonging to the selected stimulus and suppresses the activity of neurons receiving weaker stimuli. In the event correlation case, the recurrent network amplifies with a higher gain the correlation between neurons which receive highly correlated inputs while leaving the mean firing rate unaltered. We describe the network architecture and present experimental data demonstrating its context dependent computation capabilities.