We describe the RA scanner, a novel system for the examination of patients sufferingfrom rheumatoid arthritis. The RA scanner is based on a novel laser-based imaging technique which is sensitive to the optical characteristics of finger joint tissue. Based on the laser images, finger joints are classified according to whether the inflammatory status has improved or worsened. To perform the classification task, various linear andkernel-based systems were implemented and their performances were compared. Special emphasis was put on measures to reliably perform parametertuning and evaluation, since only a very small data set was available. Based on the results presented in this paper, it was concluded thatthe RA scanner permits a reliable classification of pathological finger joints, thus paving the way for a further development from prototype to product stage.

We investigate data based procedures for selecting the kernel when learning withSupport Vector Machines. We provide generalization error bounds by estimating the Rademacher complexities of the corresponding function classes. In particular we obtain a complexity bound for function classes induced by kernels with given eigenvectors, i.e., we allow to vary the spectrum and keep the eigenvectors fix. This bound is only a logarithmic factorbigger than the complexity of the function class induced by a single kernel. However, optimizing the margin over such classes leads to overfitting. We thus propose a suitable way of constraining the class. We use an efficient algorithm to solve the resulting optimization problem, present preliminary experimental results, and compare them to an alignment-based approach.

We introduce a general family of kernels based on weighted transducers orrational relations, rational kernels, that can be used for analysis of variable-length sequences or more generally weighted automata, in applications suchas computational biology or speech recognition. We show that rational kernels can be computed efficiently using a general algorithm ofcomposition of weighted transducers and a general single-source shortest-distance algorithm. We also describe several general families of positive definite symmetric rational kernels. These general kernels can be combined with Support Vector Machines to form efficient and powerful techniquesfor spoken-dialog classification: highly complex kernels become easy to design and implement and lead to substantial improvements inthe classification accuracy. We also show that the string kernels considered in applications to computational biology are all specific instances ofrational kernels.

Problems in which abnormal or novel situations should be detected can be approached by describing the domain of the class of typical examples. Theseapplications come from the areas of machine diagnostics, fault detection, illness identification or, in principle, refer to any problem wherelittle knowledge is available outside the typical class. In this paper we explain why proximities are natural representations for domain descriptors and we propose a simple one-class classifier for dissimilarity representations. By the use of linear programming an efficient one-class description can be found, based on a small number of prototype objects. This classifier can be made (1) more robust by transforming the dissimilarities and(2) cheaper to compute by using a reduced representation set. Finally, a comparison to a comparable one-class classifier by Campbell and Bennett is given.

Gaussian process regression allows a simple analytical treatment of exact Bayesianinference and has been found to provide good performance, yet scales badly with the number of training data. In this paper we compare severalapproaches towards scaling Gaussian processes regression to large data sets: the subset of representers method, the reduced rank approximation, online Gaussian processes, and the Bayesian committee machine.Furthermore we provide theoretical insight into some of our experimental results. We found that subset of representers methods can give good and particularly fast predictions for data sets with high and medium noise levels. On complex low noise data sets, the Bayesian committee machine achieves significantly better accuracy, yet at a higher computational cost.

We investigate Bayesian alternatives to classical Monte Carlo methods for evaluating integrals. Bayesian Monte Carlo (BMC) allows the incorporation ofprior knowledge, such as smoothness of the integrand, into the estimation. In a simple problem we show that this outperforms any classical importance sampling method. We also attempt more challenging multidimensionalintegrals involved in computing marginal likelihoods ofstatistical models (a.k.a.

In recent years variational methods have become a popular tool for approximate inference and learning in a wide variety of probabilistic models.For each new application, however, it is currently necessary first to derive the variational update equations, and then to implement them in application-specific code. Each of these steps is both time consuming and error prone. In this paper we describe a general purpose inference engine called VIBES ('Variational Inference forBayesian Networks') which allows a wide variety of probabilistic modelsto be implemented and solved variationally without recourse to coding. New models are specified either through a simple script or via a graphical interface analogous to a drawing package. VIBES then automatically generates and solves the variational equations.We illustrate the power and flexibility of VIBES using examples from Bayesian mixture modelling.

Pairwise data in empirical sciences typically violate metricity, either dueto noise or due to fallible estimates, and therefore are hard to analyze by conventional machine learning technology. In this paper we therefore study ways to work around this problem. First, we present an alternative embedding to multidimensional scaling (MDS) that allows us to apply a variety of classical machine learningand signal processing algorithms. The class of pairwise grouping algorithms which share the shift-invariance property is statistically invariant under this embedding procedure, leading to identical assignments of objects to clusters. Based on this new vectorial representation, denoising methods are applied in a second step.Both steps provide a theoretically well controlled setup to translate from pairwise data to the respective denoised metric representation.We demonstrate the practical usefulness of our theoretical reasoning by discovering structure in protein sequence data bases, visibly improving performance upon existing automatic methods. 1 Introduction Unsupervised grouping or clustering aims at extracting hidden structure from data (see e.g.

We present a meta-algorithm for learning in this framework that learns via a single linear classifier in high dimension. We discuss distribution independent as well as margin-based generalization bounds and present empirical and theoretical evidence showing that constraint classification benefits over existing methods of multiclass classification.

Adaptation is a ubiquitous neural and psychological phenomenon, with a wealth of instantiations and implications. Although a basic form of plasticity, it has, bar some notable exceptions, attracted computational theory of only one main variety. In this paper, we study adaptation from the perspective of factor analysis, a paradigmatic technique of unsupervised learning.We use factor analysis to reinterpret a standard view of adaptation, and apply our new model to some recent data on adaptation in the domain of face discrimination.