The immune system is a complex biological system with a highly distributed, adaptive and self-organising nature. This paper presents an Artificial Immune System (AIS) that exploits some of these characteristics and is applied to the task of film recommendation by Collaborative Filtering (CF). Natural evolution and in particular the immune system have not been designed for classical optimisation. However, for this problem, we are not interested in finding a single optimum. Rather we intend to identify a sub-set of good matches on which recommendations can be based. It is our hypothesis that an AIS built on two central aspects of the biological immune system will be an ideal candidate to achieve this: Antigen-antibody interaction for matching and idiotypic antibody-antibody interaction for diversity. Computational results are presented in support of this conjecture and compared to those found by other CF techniques.

Ontologies and automated reasoning are the building blocks of the Semantic Web initiative. Derivation rules can be included in an ontology to define derived concepts, based on base concepts. For example, rules allow to define the extension of a class or property, based on a complex relation between the extensions of the same or other classes and properties. On the other hand, the inclusion of negative information both in the form of negation-as-failure and explicit negative information is also needed to enable various forms of reasoning. In this paper, we extend RDF graphs with weak and strong negation, as well as derivation rules. The ERDF stable model semantics of the extended framework (Extended RDF) is defined, extending RDF(S) semantics. A distinctive feature of our theory, which is based on Partial Logic, is that both truth and falsity extensions of properties and classes are considered, allowing for truth value gaps. Our framework supports both closed-world and open-world reasoning through the explicit representation of the particular closed-world assumptions and the ERDF ontological categories of total properties and total classes.

We propose a framework for analyzing and comparing distributions, allowing us to design statistical tests to determine if two samples are drawn from different distributions. Our test statistic is the largest difference in expectations over functions in the unit ball of a reproducing kernel Hilbert space (RKHS). We present two tests based on large deviation bounds for the test statistic, while a third is based on the asymptotic distribution of this statistic. The test statistic can be computed in quadratic time, although efficient linear time approximations are available. Several classical metrics on distributions are recovered when the function space used to compute the difference in expectations is allowed to be more general (eg. a Banach space). We apply our two-sample tests to a variety of problems, including attribute matching for databases using the Hungarian marriage method, where they perform strongly. Excellent performance is also obtained when comparing distributions over graphs, for which these are the first such tests.

We study the performance of approximate Nash equilibria for linear congestion games. We consider how much the price of anarchy worsens and how much the price of stability improves as a function of the approximation factor $\epsilon$. We give (almost) tight upper and lower bounds for both the price of anarchy and the price of stability for atomic and non-atomic congestion games. Our results not only encompass and generalize the existing results of exact equilibria to $\epsilon$-Nash equilibria, but they also provide a unified approach which reveals the common threads of the atomic and non-atomic price of anarchy results. By expanding the spectrum, we also cast the existing results in a new light. For example, the Pigou network, which gives tight results for exact Nash equilibria of selfish routing, remains tight for the price of stability of $\epsilon$-Nash equilibria but not for the price of anarchy.

Determining the evolutionary history of a given biological data is an important task in biological sciences. Given a set of quartet topologies over a set of taxa, the Maximum Quartet Consistency (MQC) problem consists of computing a global phylogeny that satisfies the maximum number of quartets. A number of solutions have been proposed for the MQC problem, including Dynamic Programming, Constraint Programming, and more recently Answer Set Programming (ASP). ASP is currently the most efficient approach for optimally solving the MQC problem. This paper proposes encoding the MQC problem with pseudo-Boolean (PB) constraints. The use of PB allows solving the MQC problem with efficient PB solvers, and also allows considering different modeling approaches for the MQC problem. Initial results are promising, and suggest that PB can be an effective alternative for solving the MQC problem.

We present a formal model to represent and solve the unicast/multicast routing problem in networks with Quality of Service (QoS) requirements. To attain this, first we translate the network adapting it to a weighted graph (unicast) or and-or graph (multicast), where the weight on a connector corresponds to the multidimensional cost of sending a packet on the related network link: each component of the weights vector represents a different QoS metric value (e.g. bandwidth, cost, delay, packet loss). The second step consists in writing this graph as a program in Soft Constraint Logic Programming (SCLP): the engine of this framework is then able to find the best paths/trees by optimizing their costs and solving the constraints imposed on them (e.g. delay < 40msec), thus finding a solution to QoS routing problems. Moreover, c-semiring structures are a convenient tool to model QoS metrics. At last, we provide an implementation of the framework over scale-free networks and we suggest how the performance can be improved.

The notion of optimality naturally arises in many areas of applied mathematics and computer science concerned with decision making. Here we consider this notion in the context of three formalisms used for different purposes in reasoning about multi-agent systems: strategic games, CP-nets, and soft constraints. To relate the notions of optimality in these formalisms we introduce a natural qualitative modification of the notion of a strategic game. We show then that the optimal outcomes of a CP-net are exactly the Nash equilibria of such games. This allows us to use the techniques of game theory to search for optimal outcomes of CP-nets and vice-versa, to use techniques developed for CP-nets to search for Nash equilibria of the considered games. Then, we relate the notion of optimality used in the area of soft constraints to that used in a generalization of strategic games, called graphical games. In particular we prove that for a natural class of soft constraints that includes weighted constraints every optimal solution is both a Nash equilibrium and Pareto efficient joint strategy. For a natural mapping in the other direction we show that Pareto efficient joint strategies coincide with the optimal solutions of soft constraints.

This paper explores the links between Knowledge Management and new community-based models of the organization from both a theoretical and an empirical perspective. From a theoretical standpoint, we look at Communities of Practice (CoPs) and Knowledge Management (KM) and explore the links between the two as they relate to the use of information systems to manage knowledge. We begin by reviewing technologically supported approaches to KM and introduce the idea of "Systemes d'Aide a la Gestion des Connaissances" SAGC (Systems to aid the Management of Knowledge). Following this we examine the contribution that communal structures such as CoPs can make to intraorganizational KM and highlight some of 'success factors' for this approach to KM that are found in the literature. From an empirical standpoint, we present the results of a survey involving the Chief Knowledge Officers (CKOs) of twelve large French businesses; the objective of this study was to identify the factors that might influence the success of such approaches. The survey was analysed using thematic content analysis and the results are presented here with some short illustrative quotes from the CKOs. Finally, the paper concludes with some brief reflections on what can be learnt from looking at this problem from these two perspectives.

Markov networks and Bayesian networks are effective graphic representations of the dependencies embedded in probabilistic models. It is well known that independencies captured by Markov networks (called graph-isomorphs) have a finite axiomatic characterization. This paper, however, shows that independencies captured by Bayesian networks (called causal models) have no axiomatization by using even countably many Horn or disjunctive clauses. This is because a sub-independency model of a causal model may be not causal, while graph-isomorphs are closed under sub-models.

Since the early days of digital communication, hidden Markov models (HMMs) have now been also routinely used in speech recognition, processing of natural languages, images, and in bioinformatics. In an HMM $(X_i,Y_i)_{i\ge 1}$, observations $X_1,X_2,...$ are assumed to be conditionally independent given an ``explanatory'' Markov process $Y_1,Y_2,...$, which itself is not observed; moreover, the conditional distribution of $X_i$ depends solely on $Y_i$. Central to the theory and applications of HMM is the Viterbi algorithm to find {\em a maximum a posteriori} (MAP) estimate $q_{1:n}=(q_1,q_2,...,q_n)$ of $Y_{1:n}$ given observed data $x_{1:n}$. Maximum {\em a posteriori} paths are also known as Viterbi paths or alignments. Recently, attempts have been made to study the behavior of Viterbi alignments when $n\to \infty$. Thus, it has been shown that in some special cases a well-defined limiting Viterbi alignment exists. While innovative, these attempts have relied on rather strong assumptions and involved proofs which are existential. This work proves the existence of infinite Viterbi alignments in a more constructive manner and for a very general class of HMMs.