Fisher score is one of the most widely used supervised feature selection methods. However, it selects each feature independently according to their scores under the Fisher criterion, which leads to a suboptimal subset of features. In this paper, we present a generalized Fisher score to jointly select features. It aims at finding an subset of features, which maximize the lower bound of traditional Fisher score. The resulting feature selection problem is a mixed integer programming, which can be reformulated as a quadratically constrained linear programming (QCLP). It is solved by cutting plane algorithm, in each iteration of which a multiple kernel learning problem is solved alternatively by multivariate ridge regression and projected gradient descent. Experiments on benchmark data sets indicate that the proposed method outperforms Fisher score as well as many other state-of-the-art feature selection methods.

We show that the Bregman divergence provides a rich framework to estimate unnormalized statistical models for continuous or discrete random variables, that is, models which do not integrate or sum to one, respectively. We prove that recent estimation methods such as noise-contrastive estimation, ratio matching, and score matching belong to the proposed framework, and explain their interconnection based on supervised learning. Further, we discuss the role of boosting in unsupervised learning.

We propose a method that infers whether linear relations between two high-dimensional variables X and Y are due to a causal influence from X to Y or from Y to X. The earlier proposed so-called Trace Method is extended to the regime where the dimension of the observed variables exceeds the sample size. Based on previous work, we postulate conditions that characterize a causal relation between X and Y. Moreover, we describe a statistical test and argue that both causal directions are typically rejected if there is a common cause. A full theoretical analysis is presented for the deterministic case but our approach seems to be valid for the noisy case, too, for which we additionally present an approach based on a sparsity constraint. The discussed method yields promising results for both simulated and real world data.

A Support Vector Method for multivariate performance measures was recently introduced by Joachims (2005). The underlying optimization problem is currently solved using cutting plane methods such as SVM-Perf and BMRM. One can show that these algorithms converge to an eta accurate solution in O(1/Lambda*e) iterations, where lambda is the trade-off parameter between the regularizer and the loss function. We present a smoothing strategy for multivariate performance scores, in particular precision/recall break-even point and ROCArea. When combined with Nesterov's accelerated gradient algorithm our smoothing strategy yields an optimization algorithm which converges to an eta accurate solution in O(min{1/e,1/sqrt(lambda*e)}) iterations. Furthermore, the cost per iteration of our scheme is the same as that of SVM-Perf and BMRM. Empirical evaluation on a number of publicly available datasets shows that our method converges significantly faster than cutting plane methods without sacrificing generalization ability.

Conditional independence testing is an important problem, especially in Bayesian network learning and causal discovery. Due to the curse of dimensionality, testing for conditional independence of continuous variables is particularly challenging. We propose a Kernel-based Conditional Independence test (KCI-test), by constructing an appropriate test statistic and deriving its asymptotic distribution under the null hypothesis of conditional independence. The proposed method is computationally efficient and easy to implement. Experimental results show that it outperforms other methods, especially when the conditioning set is large or the sample size is not very large, in which case other methods encounter difficulties.

Structure learning of Gaussian graphical models is an extensively studied problem in the classical multivariate setting where the sample size n is larger than the number of random variables p, as well as in the more challenging setting when p>>n. However, analogous approaches for learning the structure of graphical models with mixed discrete and continuous variables when p>>n remain largely unexplored. Here we describe a statistical learning procedure for this problem based on limited-order correlations and assess its performance with synthetic and real data.

Kernel methods are successful approaches for different machine learning problems. This success is mainly rooted in using feature maps and kernel matrices. Some methods rely on the eigenvalues/eigenvectors of the kernel matrix, while for other methods the spectral information can be used to estimate the excess risk. An important question remains on how close the sample eigenvalues/eigenvectors are to the population values. In this paper, we improve earlier results on concentration bounds for eigenvalues of general kernel matrices. Meanwhile, the obstacles for sharper bounds are accounted for and partially addressed. As a case study, we derive a concentration inequality for sample kernel target-alignment. 1 INTRODUCTION Kernel methods such as Spectral Clustering, Kernel Principal Component Analysis(KPCA), and Support Vector Machines, are successful approaches in many practical machine learning and data analysis problems (Steinwart & Christmann, 2008). The main ingredient of these methods is the kernel matrix, which is built using the kernel function, evaluated at given sample points.

This work addresses the following question: Under what assumptions on the data generating process can one infer the causal graph from the joint distribution? The approach taken by conditional independence-based causal discovery methods is based on two assumptions: the Markov condition and faithfulness. It has been shown that under these assumptions the causal graph can be identified up to Markov equivalence (some arrows remain undirected) using methods like the PC algorithm. In this work we propose an alternative by defining Identifiable Functional Model Classes (IFMOCs). As our main theorem we prove that if the data generating process belongs to an IFMOC, one can identify the complete causal graph. To the best of our knowledge this is the first identifiability result of this kind that is not limited to linear functional relationships. We discuss how the IFMOC assumption and the Markov and faithfulness assumptions relate to each other and explain why we believe that the IFMOC assumption can be tested more easily on given data. We further provide a practical algorithm that recovers the causal graph from finitely many data; experiments on simulated data support the theoretical findings.

We present a new Markov chain Monte Carlo method for estimating posterior probabilities of structural features in Bayesian networks. The method draws samples from the posterior distribution of partial orders on the nodes; for each sampled partial order, the conditional probabilities of interest are computed exactly. We give both analytical and empirical results that suggest the superiority of the new method compared to previous methods, which sample either directed acyclic graphs or linear orders on the nodes.

A database of objects discovered in houses in the Roman city of Pompeii provides a unique view of ordinary life in an ancient city. Experts have used this collection to study the structure of Roman households, exploring the distribution and variability of tasks in architectural spaces, but such approaches are necessarily affected by modern cultural assumptions. In this study we present a data-driven approach to household archeology, treating it as an unsupervised labeling problem. This approach scales to large data sets and provides a more objective complement to human interpretation.