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Bayesian PCA

Neural Information Processing Systems

The technique of principal component analysis (PCA) has recently been expressed as the maximum likelihood solution for a generative latent variable model. In this paper we use this probabilistic reformulation as the basis for a Bayesian treatment of PCA. Our key result is that effective dimensionality of the latent space (equivalent to the number of retained principal components) can be determined automatically as part of the Bayesian inference procedure. An important application of this framework is to mixtures of probabilistic PCA models, in which each component can determine its own effective complexity.


Contrast Adaptation in Simple Cells by Changing the Transmitter Release Probability

Neural Information Processing Systems

Using a recurrent neural network of excitatory spiking neurons with adapting synapses we show that both effects could be explained by a fast and a slow component in the synaptic adaptation.


Tractable Variational Structures for Approximating Graphical Models

Neural Information Processing Systems

Graphical models provide a broad probabilistic framework with applications in speech recognition (Hidden Markov Models), medical diagnosis (Belief networks) and artificial intelligence (Boltzmann Machines). However, the computing time is typically exponential in the number of nodes in the graph. Within the variational framework for approximating these models, we present two classes of distributions, decimatable Boltzmann Machines and Tractable Belief Networks that go beyond the standard factorized approach. We give generalised mean-field equations for both these directed and undirected approximations. Simulation results on a small benchmark problem suggest using these richer approximations compares favorably against others previously reported in the literature. 1 Introduction Graphical models provide a powerful framework for probabilistic inference[l] but suffer intractability when applied to large scale problems.


Kernel PCA and De-Noising in Feature Spaces

Neural Information Processing Systems

Kernel PCA as a nonlinear feature extractor has proven powerful as a preprocessing step for classification algorithms. But it can also be considered as a natural generalization of linear principal component analysis. This gives rise to the question how to use nonlinear features for data compression, reconstruction, and de-noising, applications common in linear PCA. This is a nontrivial task, as the results provided by kernel PCA live in some high dimensional feature space and need not have pre-images in input space. This work presents ideas for finding approximate pre-images, focusing on Gaussian kernels, and shows experimental results using these pre-images in data reconstruction and de-noising on toy examples as well as on real world data.


Lazy Learning Meets the Recursive Least Squares Algorithm

Neural Information Processing Systems

Lazy learning is a memory-based technique that, once a query is received, extracts a prediction interpolating locally the neighboring examples of the query which are considered relevant according to a distance measure. In this paper we propose a data-driven method to select on a query-by-query basis the optimal number of neighbors to be considered for each prediction. As an efficient way to identify and validate local models, the recursive least squares algorithm is introduced in the context of local approximation and lazy learning. Furthermore, beside the winner-takes-all strategy for model selection, a local combination of the most promising models is explored. The method proposed is tested on six different datasets and compared with a state-of-the-art approach.


Vertex Identification in High Energy Physics Experiments

Neural Information Processing Systems

In High Energy Physics experiments one has to sort through a high flux of events, at a rate of tens of MHz, and select the few that are of interest. One of the key factors in making this decision is the location of the vertex where the interaction, that led to the event, took place. Here we present a novel solution to the problem of finding the location of the vertex, based on two feedforward neural networks with fixed architectures, whose parameters are chosen so as to obtain a high accuracy. The system is tested on simulated data sets, and is shown to perform better than conventional algorithms. 1 Introduction An event in High Energy Physics (HEP) is the experimental result of an interaction during the collision of particles in an accelerator. The result of this interaction is the production of tens of particles, each of which is ejected in a different direction and energy. Due to the quantum mechanical effects involved, the events differ from one another in the number of particles produced, the types of particles, and their energies. The trajectories of produced particles are detected by a very large and sophisticated detector.


Discovering Hidden Features with Gaussian Processes Regression

Neural Information Processing Systems

W is often taken to be diagonal, but if we allow W to be a general positive definite matrix which can be tuned on the basis of training data, then an eigen-analysis of W shows that we are effectively creating hidden features, where the dimensionality of the hidden-feature space is determined by the data. We demonstrate the superiority of predictions using the general matrix over those based on a diagonal matrix on two test problems.


Maximum-Likelihood Continuity Mapping (MALCOM): An Alternative to HMMs

Neural Information Processing Systems

We describe Maximum-Likelihood Continuity Mapping (MALCOM), an alternative to hidden Markov models (HMMs) for processing sequence data such as speech. While HMMs have a discrete "hidden" space constrained by a fixed finite-automaton architecture, MALCOM has a continuous hidden space-a continuity map-that is constrained only by a smoothness requirement on paths through the space. MALCOM fits into the same probabilistic framework for speech recognition as HMMs, but it represents a more realistic model of the speech production process. To evaluate the extent to which MALCOM captures speech production information, we generated continuous speech continuity maps for three speakers and used the paths through them to predict measured speech articulator data. The median correlation between the MALCOM paths obtained from only the speech acoustics and articulator measurements was 0.77 on an independent test set not used to train MALCOM or the predictor.


Fisher Scoring and a Mixture of Modes Approach for Approximate Inference and Learning in Nonlinear State Space Models

Neural Information Processing Systems

The difficulties lie in the Monte-Carlo E-step which consists of sampling from the posterior distribution of the hidden variables given the observations. The new idea presented in this paper is to generate samples from a Gaussian approximation to the true posterior from which it is easy to obtain independent samples. The parameters of the Gaussian approximation are either derived from the extended Kalman filter or the Fisher scoring algorithm. In case the posterior density is multimodal we propose to approximate the posterior by a sum of Gaussians (mixture of modes approach). We show that sampling from the approximate posterior densities obtained by the above algorithms leads to better models than using point estimates for the hidden states. In our experiment, the Fisher scoring algorithm obtained a better approximation of the posterior mode than the EKF. For a multimodal distribution, the mixture of modes approach gave superior results. 1 INTRODUCTION Nonlinear state space models (NSSM) are a general framework for representing nonlinear time series. In particular, any NARMAX model (nonlinear auto-regressive moving average model with external inputs) can be translated into an equivalent NSSM.


Finite-Dimensional Approximation of Gaussian Processes

Neural Information Processing Systems

Gaussian process (GP) prediction suffers from O(n3) scaling with the data set size n. By using a finite-dimensional basis to approximate the GP predictor, the computational complexity can be reduced. We derive optimal finite-dimensional predictors under a number of assumptions, and show the superiority of these predictors over the Projected Bayes Regression method (which is asymptotically optimal). We also show how to calculate the minimal model size for a given n. The calculations are backed up by numerical experiments.