We investigate Bayesian alternatives to classical Monte Carlo methods for evaluating integrals. Bayesian Monte Carlo (BMC) allows the incorporation of prior knowledge, such as smoothness of the integrand, into the estimation. In a simple problem we show that this outperforms any classical importance sampling method. We also attempt more challenging multidimensional integrals involved in computing marginal likelihoods of statistical models (a.k.a.

Pairwise data in empirical sciences typically violate metricity, either due to noise or due to fallible estimates, and therefore are hard to analyze by conventional machine learning technology. In this paper we therefore study ways to work around this problem. First, we present an alternative embedding to multidimensional scaling (MDS) that allows us to apply a variety of classical machine learning and signal processing algorithms. The class of pairwise grouping algorithms which share the shift-invariance property is statistically invariant under this embedding procedure, leading to identical assignments of objects to clusters. Based on this new vectorial representation, denoising methods are applied in a second step. Both steps provide a theoretically well controlled setup to translate from pairwise data to the respective denoised metric representation. We demonstrate the practical usefulness of our theoretical reasoning by discovering structure in protein sequence data bases, visibly improving performance upon existing automatic methods. 1 Introduction Unsupervised grouping or clustering aims at extracting hidden structure from data (see e.g.

Language acquisition is a special kind of learning problem because the outcome of learning of one generation is the input for the next. That makes it possible for languages to adapt to the particularities of the learner. In this paper, I show that this type of language change has important consequences for models of the evolution and acquisition of syntax.

Adaptation is a ubiquitous neural and psychological phenomenon, with a wealth of instantiations and implications. Although a basic form of plasticity, it has, bar some notable exceptions, attracted computational theory of only one main variety. In this paper, we study adaptation from the perspective of factor analysis, a paradigmatic technique of unsupervised learning. We use factor analysis to reinterpret a standard view of adaptation, and apply our new model to some recent data on adaptation in the domain of face discrimination.

We present a meta-algorithm for learning in this framework that learns via a single linear classifier in high dimension. We discuss distribution independent as well as margin-based generalization bounds and present empirical and theoretical evidence showing that constraint classification benefits over existing methods of multiclass classification.

We introduce the notion of Morton-style factorial coding and illustrate how it may help understand information integration and perceptual coding in the brain. We show that by focusing on average responses one may miss the existence of factorial coding mechanisms that become only apparent when analyzing spike count histograms. We show evidence suggesting that the classical/nonclassical receptive field organization in the cortex effectively enforces the development of Morton-style factorial codes. This may provide some cues to help understand perceptual coding in the brain and to develop new unsupervised learning algorithms. While methods like ICA (Bell & Sejnowski, 1997) develop independent codes, in Morton-style coding the goal is to make two or more external aspects of the world become independent when conditioning on internal representations.

In these types of synapses, the short-term dynamics of the synaptic efficacies are governed by the relative timing of the pre-and post-synaptic spikes, while on long time scales the efficacies tend asymptotically to either a potentiated state or to a depressed one. We fabricated a prototype VLSI chip containing a network of integrate and fire neurons interconnected via bistable STDP synapses. Test results from this chip demonstrate the synapse's STDP learning properties, and its long-term bistable characteristics.

We consider loopy belief propagation for approximate inference in probabilistic graphical models. A limitation of the standard algorithm is that clique marginals are computed as if there were no loops in the graph. To overcome this limitation, we introduce fractional belief propagation. Fractional belief propagation is formulated in terms of a family of approximate free energies, which includes the Bethe free energy and the naive mean-field free as special cases. Using the linear response correction of the clique marginals, the scale parameters can be tuned. Simulation results illustrate the potential merits of the approach.

Monaural speech separation has been studied in previous systems that incorporate auditory scene analysis principles. A major problem for these systems is their inability to deal with speech in the highfrequency range. Psychoacoustic evidence suggests that different perceptual mechanisms are involved in handling resolved and unresolved harmonics. Motivated by this, we propose a model for monaural separation that deals with low-frequency and highfrequency signals differently. For resolved harmonics, our model generates segments based on temporal continuity and cross-channel correlation, and groups them according to periodicity. For unresolved harmonics, the model generates segments based on amplitude modulation (AM) in addition to temporal continuity and groups them according to AM repetition rates derived from sinusoidal modeling. Underlying the separation process is a pitch contour obtained according to psychoacoustic constraints. Our model is systematically evaluated, and it yields substantially better performance than previous systems, especially in the high-frequency range.

In recent years variational methods have become a popular tool for approximate inference and learning in a wide variety of probabilistic models. For each new application, however, it is currently necessary first to derive the variational update equations, and then to implement them in application-specific code. Each of these steps is both time consuming and error prone. In this paper we describe a general purpose inference engine called VIBES ('Variational Inference for Bayesian Networks') which allows a wide variety of probabilistic models to be implemented and solved variationally without recourse to coding. New models are specified either through a simple script or via a graphical interface analogous to a drawing package. VIBES then automatically generates and solves the variational equations. We illustrate the power and flexibility of VIBES using examples from Bayesian mixture modelling.