Within computational biology, algorithms are constructed with the aim of extracting knowledge from biological data, in particular, data generated by the large genome projects, where gene and protein sequences are produced in high volume. In this article, we explore new ways of representing protein-sequence information, using machine learning strategies, where the primary goal is the discovery of novel powerful representations for use in AI techniques. In the case of proteins and the 20 different amino acids they typically contain, it is also a secondary goal to discover how the current selection of amino acids -- which now are common in proteins -- might have emerged from simpler selections, or alphabets, in use earlier during the evolution of living organisms.

NASA Ames Research Center Polish Academy of Sciences URL: www.taai.org.tw/announce/ (PRICAI 2004). (ICKEDS 2004). This book looks at some of the results of the synergy among AI, cognitive science, and education. Examples include virtual students whose misconceptions force students to reflect on their own knowledge, intelligent tutoring systems, and speech recognition technology that helps students learn to read.

"Over the last decade, This eclectic keepsake provides a sampling to design vision and navigation some jobs have vanished, others are fading of what can be found (with links to the full systems based on the honeybee.... But lots of new ones have appeared. Please key lies in understanding how insects With the help of Toronto Star keep in mind that (1) the mere mention of perceive their world…." "From the Luddites the articles were initially available and thinking.... * Bio-informatician: Not Such collection--updated, hyperlinked, and molecular biology and computer science. The robot scientist developed (www.dailynewstribune.com). TIME online edition from the point of view of the human researcher, has participated in various fund-raising (www.time.com). "President Bush will announce it does so as effectively as a person.... events -- including selling Krispy Kreme later this week a plan to resume One question is, if their robot does doughnuts on Moody Street the day after missions to the Moon and send humans make an important discovery, will it be Thanksgiving and raffling off a new DVD to Mars within 20 years, with international eligible to win a Nobel prize?" player donated by Watch City Appliance. Such a plan is likely ... Students created two robots from to be tremendously expensive, and some January 15: A New Robot Makes a Leap scratch that were not manipulated by remote argue that manned space missions are unnecessary in Brainpower. Philadelphia control, but, rather, programmed to with the level of sophistication Inquirer (www.philly.com). "A new robot is compete in the Botball competition.

Later in the school, the focus turned to ontologies, which is where the true power of the semantic web lies. EUROLAN lecturers treated its potential in terms of what the topic of ontology development it might--and might not--bring to us in the future. This year's and how great its impact will really start somewhere, somehow, even if school was organized by the Faculty be. Although it is not yet clear what emerges is a variety of ontological of Computer Science at the A. I. Cuza whether the current vision of the semantic stores from which to choose. University of Iasi, the Research Institute web will indeed reach its expectations, The EUROLAN summer school also for Artificial Intelligence at the there are more and more included a workshop on ontologies Romanian Academy in Bucharest, opinions that it represents a major and information extraction, a student and the Department of Computer technological step that will permanently workshop on applied natural Science at Vassar College.

Searching for and making decisions about information is becoming increasingly difficult as the amount of information and number of choices increases. Recommendation systems help users find items of interest of a particular type, such as movies or restaurants, but are still somewhat awkward to use. Our solution is to take advantage of the complementary strengths of personalized recommendation systems and dialogue systems, creating personalized aides. We present a system -- the Adaptive Place Advisor -- that treats item selection as an interactive, conversational process, with the program inquiring about item attributes and the user responding. Individual, long-term user preferences are unobtrusively obtained in the course of normal recommendation dialogues and used to direct future conversations with the same user. We present a novel user model that influences both item search and the questions asked during a conversation. We demonstrate the effectiveness of our system in significantly reducing the time and number of interactions required to find a satisfactory item, as compared to a control group of users interacting with a non-adaptive version of the system.

Non-deductive reasoning systems are often representation dependent: representing the same situation in two different ways may cause such a system to return two different answers. Some have viewed this as a significant problem. For example, the principle of maximum entropyhas been subjected to much criticism due to its representation dependence. There has, however, been almost no work investigating representation dependence. In this paper, we formalize this notion and show that it is not a problem specific to maximum entropy. In fact, we show that any representation-independent probabilistic inference procedure that ignores irrelevant information is essentially entailment, in a precise sense. Moreover, we show that representation independence is incompatible with even a weak default assumption of independence. We then show that invariance under a restricted class of representation changes can form a reasonable compromise between representation independence and other desiderata, and provide a construction of a family of inference procedures that provides such restricted representation independence, using relative entropy.

We propose a formalism for representation of finite languages, referred to as the class of IDL-expressions, which combines concepts that were only considered in isolation in existing formalisms. The suggested applications are in natural language processing, more specifically in surface natural language generation and in machine translation, where a sentence is obtained by first generating a large set of candidate sentences, represented in a compact way, and then by filtering such a set through a parser. We study several formal properties of IDL-expressions and compare this new formalism with more standard ones. We also present a novel parsing algorithm for IDL-expressions and prove a non-trivial upper bound on its time complexity.

Abstract: We introduce an abductive method for a coherent integration of independent data-sources. The idea is to compute a list of data-facts that should be inserted to the amalgamated database or retracted from it in order to restore its consistency. This method is implemented by an abductive solver, called Asystem, that applies SLDNFA-resolution on a meta-theory that relates different, possibly contradicting, input databases. We also give a pure model-theoretic analysis of the possible ways to `recover' consistent data from an inconsistent database in terms of those models of the database that exhibit as minimal inconsistent information as reasonably possible. This allows us to characterize the `recovered databases' in terms of the `preferred' (i.e., most consistent) models of the theory. The outcome is an abductive-based application that is sound and complete with respect to a corresponding model-based, preferential semantics, and -- to the best of our knowledge -- is more expressive (thus more general) than any other implementation of coherent integration of databases.

Two major goals in machine learning are the discovery and improvement of solutions to complex problems. In this paper, we argue that complexification, i.e. the incremental elaboration of solutions through adding new structure, achieves both these goals. We demonstrate the power of complexification through the NeuroEvolution of Augmenting Topologies (NEAT) method, which evolves increasingly complex neural network architectures. NEAT is applied to an open-ended coevolutionary robot duel domain where robot controllers compete head to head. Because the robot duel domain supports a wide range of strategies, and because coevolution benefits from an escalating arms race, it serves as a suitable testbed for studying complexification. When compared to the evolution of networks with fixed structure, complexifying evolution discovers significantly more sophisticated strategies. The results suggest that in order to discover and improve complex solutions, evolution, and search in general, should be allowed to complexify as well as optimize.

This is the first of three planned papers describing ZAP, a satisfiability engine that substantially generalizes existing tools while retaining the performance characteristics of modern high-performance solvers. The fundamental idea underlying ZAP is that many problems passed to such engines contain rich internal structure that is obscured by the Boolean representation used; our goal is to define a representation in which this structure is apparent and can easily be exploited to improve computational performance. This paper is a survey of the work underlying ZAP, and discusses previous attempts to improve the performance of the Davis-Putnam-Logemann-Loveland algorithm by exploiting the structure of the problem being solved. We examine existing ideas including extensions of the Boolean language to allow cardinality constraints, pseudo-Boolean representations, symmetry, and a limited form of quantification. While this paper is intended as a survey, our research results are contained in the two subsequent articles, with the theoretical structure of ZAP described in the second paper in this series, and ZAP's implementation described in the third.