A main challenge of data-driven sciences is how to make maximal use of the progressively expanding databases of experimental datasets in order to keep research cumulative. We introduce the idea of a modeling-based dataset retrieval engine designed for relating a researcher's experimental dataset to earlier work in the field. The search is (i) data-driven to enable new findings, going beyond the state of the art of keyword searches in annotations, (ii) modeling-driven, to both include biological knowledge and insights learned from data, and (iii) scalable, as it is accomplished without building one unified grand model of all data. Assuming each dataset has been modeled beforehand, by the researchers or by database managers, we apply a rapidly computable and optimizable combination model to decompose a new dataset into contributions from earlier relevant models. By using the data-driven decomposition we identify a network of interrelated datasets from a large annotated human gene expression atlas. While tissue type and disease were major driving forces for determining relevant datasets, the found relationships were richer and the model-based search was more accurate than keyword search; it moreover recovered biologically meaningful relationships that are not straightforwardly visible from annotations, for instance, between cells in different developmental stages such as thymocytes and T-cells. Data-driven links and citations matched to a large extent; the data-driven links even uncovered corrections to the publication data, as two of the most linked datasets were not highly cited and turned out to have wrong publication entries in the database.

Representations in the auditory cortex might be based on mechanisms similar to the visual ventral stream; modules for building invariance to transformations and multiple layers for compositionality and selectivity. In this paper we propose the use of such computational modules for extracting invariant and discriminative audio representations. Building on a theory of invariance in hierarchical architectures, we propose a novel, mid-level representation for acoustical signals, using the empirical distributions of projections on a set of templates and their transformations. Under the assumption that, by construction, this dictionary of templates is composed from similar classes, and samples the orbit of variance-inducing signal transformations (such as shift and scale), the resulting signature is theoretically guaranteed to be unique, invariant to transformations and stable to deformations. Modules of projection and pooling can then constitute layers of deep networks, for learning composite representations. We present the main theoretical and computational aspects of a framework for unsupervised learning of invariant audio representations, empirically evaluated on music genre classification. This work was supported by the Center for Brains, Minds and Machines (CBMM), funded by NSF STC award CCF - 1231216.

We propose a novel method for maximum likelihood-based parameter inference in nonlinear and/or non-Gaussian state space models. The method is an iterative procedure with three steps. At each iteration a particle filter is used to estimate the value of the log-likelihood function at the current parameter iterate. Using these log-likelihood estimates, a surrogate objective function is created by utilizing a Gaussian process model. Finally, we use a heuristic procedure to obtain a revised parameter iterate, providing an automatic trade-off between exploration and exploitation of the surrogate model. The method is profiled on two state space models with good performance both considering accuracy and computational cost.

General game players are computer systems able to play strategy games based solely on formal game descriptions supplied at "runtime" (n other words, they don't know the rules until the game starts). Unlike specialized game players, such as Deep Blue, general game players cannot rely on algorithms designed in advance for specific games; they must discover such algorithms themselves. General game playing expertise depends on intelligence on the part of the game player and not just intelligence of the programmer of the game player. GGP is an interesting application in its own right. It is intellectually engaging and more than a little fun.

What lies between `\emph{sensing}' and `\emph{sensibility}'? In other words, what kind of cognitive processes mediate sensing capability, and the formation of sensible impressions ---e.g., abstractions, analogies, hypotheses and theory formation, beliefs and their revision, argument formation--- in domain-specific problem solving, or in regular activities of everyday living, working and simply going around in the environment? How can knowledge and reasoning about such capabilities, as exhibited by humans in particular problem contexts, be used as a model and benchmark for the development of collaborative cognitive (interaction) systems concerned with human assistance, assurance, and empowerment? We pose these questions in the context of a range of assistive technologies concerned with \emph{visuo-spatial perception and cognition} tasks encompassing aspects such as commonsense, creativity, and the application of specialist domain knowledge and problem-solving thought processes. Assistive technologies being considered include: (a) human activity interpretation; (b) high-level cognitive rovotics; (c) people-centred creative design in domains such as architecture & digital media creation, and (d) qualitative analyses geographic information systems. Computational narratives not only provide a rich cognitive basis, but they also serve as a benchmark of functional performance in our development of computational cognitive assistance systems. We posit that computational narrativisation pertaining to space, actions, and change provides a useful model of \emph{visual} and \emph{spatio-temporal thinking} within a wide-range of problem-solving tasks and application areas where collaborative cognitive systems could serve an assistive and empowering function.

We present chemlambda (or the chemical concrete machine), an artificial chemistry with the following properties: (a) is Turing complete, (b) has a model of decentralized, distributed computing associated to it, (c) works at the level of individual (artificial) molecules, subject of reversible, but otherwise deterministic interactions with a small number of enzymes, (d) encodes information in the geometrical structure of the molecules and not in their numbers, (e) all interactions are purely local in space and time. This is part of a larger project to create computing, artificial chemistry and artificial life in a distributed context, using topological and graphical languages.

There are plenty of problems where the data available is scarce and expensive. We propose a generator of semi-artificial data with similar properties to the original data which enables development and testing of different data mining algorithms and optimization of their parameters. The generated data allow a large scale experimentation and simulations without danger of overfitting. The proposed generator is based on RBF networks which learn sets of Gaussian kernels. Learned Gaussian kernels can be used in a generative mode to generate the data from the same distributions. To asses quality of the generated data we developed several workflows and used them to evaluate the statistical properties of the generated data, structural similarity, and predictive similarity using supervised and unsupervised learning techniques. To determine usability of the proposed generator we conducted a large scale evaluation using 51 UCI data sets. The results show a considerable similarity between the original and generated data and indicate that the method can be useful in several development and simulation scenarios.

The fundamental step in measuring the robustness of a system is the synthesis of the so called Process Map.This is generally based on the user raw data material.Process Maps are of fundamental importance towards the understanding of the nature of a system in that they indicate which variables are causally related and which are particularly important.This paper represent the system Map or business structure map to understand business criteria studying the various aspects of the company.The business structure map or knowledge map or Process map are used to increase the growth of the company by giving some useful measures according to the business criteria.This paper also deals with the different company strategy to reduce the risk factors.Process Map is helpful for building such knowledge successfully.Making decisions from such map in a highly complex situation requires more knowledge and resources.

This paper provides a gentle introduction to problem solving with the IDP3 system. The core of IDP3 is a finite model generator that supports first order logic enriched with types, inductive definitions, aggregates and partial functions. It offers its users a modeling language that is a slight extension of predicate logic and allows them to solve a wide range of search problems. Apart from a small introductory example, applications are selected from problems that arose within machine learning and data mining research. These research areas have recently shown a strong interest in declarative modeling and constraint solving as opposed to algorithmic approaches. The paper illustrates that the IDP3 system can be a valuable tool for researchers with such an interest. The first problem is in the domain of stemmatology, a domain of philology concerned with the relationship between surviving variant versions of text. The second problem is about a somewhat related problem within biology where phylogenetic trees are used to represent the evolution of species. The third and final problem concerns the classical problem of learning a minimal automaton consistent with a given set of strings. For this last problem, we show that the performance of our solution comes very close to that of a state-of-the art solution. For each of these applications, we analyze the problem, illustrate the development of a logic-based model and explore how alternatives can affect the performance.

The motivation of this work is to improve the performance of standard stacking approaches or ensembles, which are composed of simple, heterogeneous base models, through the integration of the generation and selection stages for regression problems. We propose two extensions to the standard stacking approach. In the first extension we combine a set of standard stacking approaches into an ensemble of ensembles using a two-step ensemble learning in the regression setting. The second extension consists of two parts. In the initial part a diversity mechanism is injected into the original training data set, systematically generating different training subsets or partitions, and corresponding ensembles of ensembles. In the final part after measuring the quality of the different partitions or ensembles, a max-min rule-based selection algorithm is used to select the most appropriate ensemble/partition on which to make the final prediction. We show, based on experiments over a broad range of data sets, that the second extension performs better than the best of the standard stacking approaches, and is as good as the oracle of databases, which has the best base model selected by cross-validation for each data set. In addition to that, the second extension performs better than two state-of-the-art ensemble methods for regression, and it is as good as a third state-of-the-art ensemble method.