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Reliable ABC model choice via random forests

arXiv.org Machine Learning

Approximate Bayesian computation (ABC) methods provide an elaborate approach to Bayesian inference on complex models, including model choice. Both theoretical arguments and simulation experiments indicate, however, that model posterior probabilities may be poorly evaluated by standard ABC techniques. We propose a novel approach based on a machine learning tool named random forests to conduct selection among the highly complex models covered by ABC algorithms. We thus modify the way Bayesian model selection is both understood and operated, in that we rephrase the inferential goal as a classification problem, first predicting the model that best fits the data with random forests and postponing the approximation of the posterior probability of the predicted MAP for a second stage also relying on random forests. Compared with earlier implementations of ABC model choice, the ABC random forest approach offers several potential improvements: (i) it often has a larger discriminative power among the competing models, (ii) it is more robust against the number and choice of statistics summarizing the data, (iii) the computing effort is drastically reduced (with a gain in computation efficiency of at least fifty), and (iv) it includes an approximation of the posterior probability of the selected model. The call to random forests will undoubtedly extend the range of size of datasets and complexity of models that ABC can handle. We illustrate the power of this novel methodology by analyzing controlled experiments as well as genuine population genetics datasets. The proposed methodologies are implemented in the R package abcrf available on the CRAN.


Quasi-Newton particle Metropolis-Hastings

arXiv.org Machine Learning

Particle Metropolis-Hastings enables Bayesian parameter inference in general nonlinear state space models (SSMs). However, in many implementations a random walk proposal is used and this can result in poor mixing if not tuned correctly using tedious pilot runs. Therefore, we consider a new proposal inspired by quasi-Newton algorithms that may achieve similar (or better) mixing with less tuning. An advantage compared to other Hessian based proposals, is that it only requires estimates of the gradient of the log-posterior. A possible application is parameter inference in the challenging class of SSMs with intractable likelihoods. We exemplify this application and the benefits of the new proposal by modelling log-returns of future contracts on coffee by a stochastic volatility model with $\alpha$-stable observations.


Fast rates in statistical and online learning

arXiv.org Machine Learning

The speed with which a learning algorithm converges as it is presented with more data is a central problem in machine learning --- a fast rate of convergence means less data is needed for the same level of performance. The pursuit of fast rates in online and statistical learning has led to the discovery of many conditions in learning theory under which fast learning is possible. We show that most of these conditions are special cases of a single, unifying condition, that comes in two forms: the central condition for 'proper' learning algorithms that always output a hypothesis in the given model, and stochastic mixability for online algorithms that may make predictions outside of the model. We show that under surprisingly weak assumptions both conditions are, in a certain sense, equivalent. The central condition has a re-interpretation in terms of convexity of a set of pseudoprobabilities, linking it to density estimation under misspecification. For bounded losses, we show how the central condition enables a direct proof of fast rates and we prove its equivalence to the Bernstein condition, itself a generalization of the Tsybakov margin condition, both of which have played a central role in obtaining fast rates in statistical learning. Yet, while the Bernstein condition is two-sided, the central condition is one-sided, making it more suitable to deal with unbounded losses. In its stochastic mixability form, our condition generalizes both a stochastic exp-concavity condition identified by Juditsky, Rigollet and Tsybakov and Vovk's notion of mixability. Our unifying conditions thus provide a substantial step towards a characterization of fast rates in statistical learning, similar to how classical mixability characterizes constant regret in the sequential prediction with expert advice setting.


On TD(0) with function approximation: Concentration bounds and a centered variant with exponential convergence

arXiv.org Machine Learning

We provide non-asymptotic bounds for the well-known temporal difference learning algorithm TD(0) with linear function approximators. These include high-probability bounds as well as bounds in expectation. Our analysis suggests that a step-size inversely proportional to the number of iterations cannot guarantee optimal rate of convergence unless we assume (partial) knowledge of the stationary distribution for the Markov chain underlying the policy considered. We also provide bounds for the iterate averaged TD(0) variant, which gets rid of the step-size dependency while exhibiting the optimal rate of convergence. Furthermore, we propose a variant of TD(0) with linear approximators that incorporates a centering sequence, and establish that it exhibits an exponential rate of convergence in expectation. We demonstrate the usefulness of our bounds on two synthetic experimental settings.


Belief Change with Uncertain Action Histories

Journal of Artificial Intelligence Research

We consider the iterated belief change that occurs following an alternating sequence of actions and observations. At each instant, an agent has beliefs about the actions that have occurred as well as beliefs about the resulting state of the world. We represent such problems by a sequence of ranking functions, so an agent assigns a quantitative plausibility value to every action and every state at each point in time. The resulting formalism is able to represent fallible belief, erroneous perception, exogenous actions, and failed actions. We illustrate that our framework is a generalization of several existing approaches to belief change, and it appropriately captures the non-elementary interaction between belief update and belief revision.


AutoFolio: An Automatically Configured Algorithm Selector

Journal of Artificial Intelligence Research

Algorithm selection (AS) techniques -- which involve choosing from a set of algorithms the one expected to solve a given problem instance most efficiently -- have substantially improved the state of the art in solving many prominent AI problems, such as SAT, CSP, ASP, MAXSAT and QBF. Although several AS procedures have been introduced, not too surprisingly, none of them dominates all others across all AS scenarios. Furthermore, these procedures have parameters whose optimal values vary across AS scenarios. This holds specifically for the machine learning techniques that form the core of current AS procedures, and for their hyperparameters. Therefore, to successfully apply AS to new problems, algorithms and benchmark sets, two questions need to be answered: (i) how to select an AS approach and (ii) how to set its parameters effectively. We address both of these problems simultaneously by using automated algorithm configuration. Specifically, we demonstrate that we can automatically configure claspfolio 2, which implements a large variety of different AS approaches and their respective parameters in a single, highly-parameterized algorithm framework. Our approach, dubbed AutoFolio, allows researchers and practitioners across a broad range of applications to exploit the combined power of many different AS methods. We demonstrate AutoFolio can significantly improve the performance of claspfolio 2 on 8 out of the 13 scenarios from the Algorithm Selection Library, leads to new state-of-the-art algorithm selectors for 7 of these scenarios, and matches state-of-the-art performance (statistically) on all other scenarios. Compared to the best single algorithm for each AS scenario, AutoFolio achieves average speedup factors between 1.3 and 15.4.


Mechanisms for Multi-unit Combinatorial Auctions with a Few Distinct Goods

Journal of Artificial Intelligence Research

We design and analyze deterministic truthful approximation mechanisms for multi-unit Combinatorial Auctions involving only a constant number of distinct goods, each in arbitrary limited supply. Prospective buyers (bidders) have preferences over multisets of items, i.e., for more than one unit per distinct good. Our objective is to determine allocations of multisets that maximize the Social Welfare. Our main results are for multi-minded and submodular bidders. In the first setting each bidder has a positive value for being allocated one multiset from a prespecified demand set of alternatives. In the second setting each bidder is associated to a submodular valuation function that defines his value for the multiset he is allocated. For multi-minded bidders, we design a truthful FPTAS that fully optimizes the Social Welfare, while violating the supply constraints on goods within factor (1+e), for any fixed e>0 (i.e., the approximation applies to the constraints and not to the Social Welfare). This result is best possible, in that full optimization is impossible without violating the supply constraints. For submodular bidders, we obtain a PTAS that approximates the optimum Social Welfare within factor (1+e), for any fixed e>0, without violating the supply constraints. This result is best possible as well. Our allocation algorithms are Maximal-in-Range and yield truthful mechanisms, when paired with Vickrey-Clarke-Groves payments.


Model Guided Sampling Optimization for Low-dimensional Problems

arXiv.org Machine Learning

Optimization of very expensive black-box functions requires utilization of maximum information gathered by the process of optimization. Model Guided Sampling Optimization (MGSO) forms a more robust alternative to Jones' Gaussian-process-based EGO algorithm. Instead of EGO's maximizing expected improvement, the MGSO uses sampling the probability of improvement which is shown to be helpful against trapping in local minima. Further, the MGSO can reach close-to-optimum solutions faster than standard optimization algorithms on low dimensional or smooth problems.


Calibration of One-Class SVM for MV set estimation

arXiv.org Machine Learning

A general approach for anomaly detection or novelty detection consists in estimating high density regions or Minimum Volume (MV) sets. The One-Class Support Vector Machine (OCSVM) is a state-of-the-art algorithm for estimating such regions from high dimensional data. Yet it suffers from practical limitations. When applied to a limited number of samples it can lead to poor performance even when picking the best hyperparameters. Moreover the solution of OCSVM is very sensitive to the selection of hyperparameters which makes it hard to optimize in an unsupervised setting. We present a new approach to estimate MV sets using the OCSVM with a different choice of the parameter controlling the proportion of outliers. The solution function of the OCSVM is learnt on a training set and the desired probability mass is obtained by adjusting the offset on a test set to prevent overfitting. Models learnt on different train/test splits are then aggregated to reduce the variance induced by such random splits. Our approach makes it possible to tune the hyperparameters automatically and obtain nested set estimates. Experimental results show that our approach outperforms the standard OCSVM formulation while suffering less from the curse of dimensionality than kernel density estimates. Results on actual data sets are also presented.


A review of homomorphic encryption and software tools for encrypted statistical machine learning

arXiv.org Machine Learning

The extensive use of private and personally identifiable information in modern statistical (and machine learning) applications can present an obstacle to individuals contributing their data to research. As just one example, when considering contribution to biobanks Kaufman et al. (2009) reported 90% of respondents had privacy concerns. Addressing these concerns is paramount if the participation rate in biomedical and genetic research is to be increased, especially for government and industry where public trust is lower (Kaufman et al., 2009). Indeed, industry is on the brink on embarking on biomedical applications on a scale never before witnessed via the impending wave of so-called'wearable devices' such as smart watches, which present serious privacy concerns. Companies hope to market the ability to monitor and track vital health signs round the clock, perhaps fitting classification models to alert different health concerns of interest.