There has been an explosion of interest in functional Magnetic Resonance Imaging (MRI) during the past two decades. Naturally, this has been accompanied by many major advances in the understanding of the human connectome. These advances have served to pose novel challenges as well as open new avenues for research. One of the most promising and exciting of such avenues is the study of functional MRI in real-time. Such studies have recently gained momentum and have been applied in a wide variety of settings; ranging from training of healthy subjects to self-regulate neuronal activity to being suggested as potential treatments for clinical populations. To date, the vast majority of these studies have focused on a single region at a time. This is due in part to the many challenges faced when estimating dynamic functional connectivity networks in real-time. In this work we propose a novel methodology with which to accurately track changes in functional connectivity networks in real-time. We adapt the recently proposed SINGLE algorithm for estimating sparse and temporally homo- geneous dynamic networks to be applicable in real-time. The proposed method is applied to motor task data from the Human Connectome Project as well as to real-time data ob- tained while exploring a virtual environment. We show that the algorithm is able to estimate significant task-related changes in network structure quickly enough to be useful in future brain-computer interface applications.

Gaussian Mixture Models (GMM) have found many applications in density estimation and data clustering. However, the model does not adapt well to curved and strongly nonlinear data. Recently there appeared an improvement called AcaGMM (Active curve axis Gaussian Mixture Model), which fits Gaussians along curves using an EM-like (Expectation Maximization) approach. Using the ideas standing behind AcaGMM, we build an alternative active function model of clustering, which has some advantages over AcaGMM. In particular it is naturally defined in arbitrary dimensions and enables an easy adaptation to clustering of complicated datasets along the predefined family of functions. Moreover, it does not need external methods to determine the number of clusters as it automatically reduces the number of groups on-line.

For most problems in science and engineering we can obtain data sets that describe the observed system from various perspectives and record the behavior of its individual components. Heterogeneous data sets can be collectively mined by data fusion. Fusion can focus on a specific target relation and exploit directly associated data together with contextual data and data about system's constraints. In the paper we describe a data fusion approach with penalized matrix tri-factorization (DFMF) that simultaneously factorizes data matrices to reveal hidden associations. The approach can directly consider any data that can be expressed in a matrix, including those from feature-based representations, ontologies, associations and networks. We demonstrate the utility of DFMF for gene function prediction task with eleven different data sources and for prediction of pharmacologic actions by fusing six data sources. Our data fusion algorithm compares favorably to alternative data integration approaches and achieves higher accuracy than can be obtained from any single data source alone.

The production system is a theoretical model of computation relevant to the artificial intelligence field allowing for problem solving procedures such as hierarchical tree search. In this work we explore some of the connections between artificial intelligence and quantum computation by presenting a model for a quantum production system. Our approach focuses on initially developing a model for a reversible production system which is a simple mapping of Bennett's reversible Turing machine. We then expand on this result in order to accommodate for the requirements of quantum computation. We present the details of how our proposition can be used alongside Grover's algorithm in order to yield a speedup comparatively to its classical counterpart. We discuss the requirements associated with such a speedup and how it compares against a similar quantum hierarchical search approach.

This paper describes the resource- and system-building efforts of an eight-week Johns Hopkins University Human Language Technology Center of Excellence Summer Camp for Applied Language Exploration (SCALE-2009) on Semantically-Informed Machine Translation (SIMT). We describe a new modality/negation (MN) annotation scheme, the creation of a (publicly available) MN lexicon, and two automated MN taggers that we built using the annotation scheme and lexicon. Our annotation scheme isolates three components of modality and negation: a trigger (a word that conveys modality or negation), a target (an action associated with modality or negation) and a holder (an experiencer of modality). We describe how our MN lexicon was semi-automatically produced and we demonstrate that a structure-based MN tagger results in precision around 86% (depending on genre) for tagging of a standard LDC data set. We apply our MN annotation scheme to statistical machine translation using a syntactic framework that supports the inclusion of semantic annotations. Syntactic tags enriched with semantic annotations are assigned to parse trees in the target-language training texts through a process of tree grafting. While the focus of our work is modality and negation, the tree grafting procedure is general and supports other types of semantic information. We exploit this capability by including named entities, produced by a pre-existing tagger, in addition to the MN elements produced by the taggers described in this paper. The resulting system significantly outperformed a linguistically naive baseline model (Hiero), and reached the highest scores yet reported on the NIST 2009 Urdu-English test set. This finding supports the hypothesis that both syntactic and semantic information can improve translation quality.

Typical dimensionality reduction (DR) methods are often data-oriented, focusing on directly reducing the number of random variables (features) while retaining the maximal variations in the high-dimensional data. In unsupervised situations, one of the main limitations of these methods lies in their dependency on the scale of data features. This paper aims to address the problem from a new perspective and considers model-oriented dimensionality reduction in parameter spaces of binary multivariate distributions. Specifically, we propose a general parameter reduction criterion, called Confident-Information-First (CIF) principle, to maximally preserve confident parameters and rule out less confident parameters. Formally, the confidence of each parameter can be assessed by its contribution to the expected Fisher information distance within the geometric manifold over the neighbourhood of the underlying real distribution. We then revisit Boltzmann machines (BM) from a model selection perspective and theoretically show that both the fully visible BM (VBM) and the BM with hidden units can be derived from the general binary multivariate distribution using the CIF principle. This can help us uncover and formalize the essential parts of the target density that BM aims to capture and the non-essential parts that BM should discard. Guided by the theoretical analysis, we develop a sample-specific CIF for model selection of BM that is adaptive to the observed samples. The method is studied in a series of density estimation experiments and has been shown effective in terms of the estimate accuracy.

A central question for active learning (AL) is: "what is the optimal selection?" Defining optimality by classifier loss produces a new characterisation of optimal AL behaviour, by treating expected loss reduction as a statistical target for estimation. This target forms the basis of model retraining improvement (MRI), a novel approach providing a statistical estimation framework for AL. This framework is constructed to address the central question of AL optimality, and to motivate the design of estimation algorithms. MRI allows the exploration of optimal AL behaviour, and the examination of AL heuristics, showing precisely how they make sub-optimal selections. The abstract formulation of MRI is used to provide a new guarantee for AL, that an unbiased MRI estimator should outperform random selection. This MRI framework reveals intricate estimation issues that in turn motivate the construction of new statistical AL algorithms. One new algorithm in particular performs strongly in a large-scale experimental study, compared to standard AL methods. This competitive performance suggests that practical efforts to minimise estimation bias may be important for AL applications.

This paper presents an original approach for jointly fitting survival times and classifying samples into subgroups. The Coxlogit model is a generalized linear model with a common set of selected features for both tasks. Survival times and class labels are here assumed to be conditioned by a common risk score which depends on those features. Learning is then naturally expressed as maximizing the joint probability of subgroup labels and the ordering of survival events, conditioned to a common weight vector. The model is estimated by minimizing a regularized log-likelihood through a coordinate descent algorithm. Validation on synthetic and breast cancer data shows that the proposed approach outperforms a standard Cox model or logistic regression when both predicting the survival times and classifying new samples into subgroups. It is also better at selecting informative features for both tasks.

Frank-Wolfe algorithms have recently regained the attention of the Machine Learning community. Their solid theoretical properties and sparsity guarantees make them a suitable choice for a wide range of problems in this field. In addition, several variants of the basic procedure exist that improve its theoretical properties and practical performance. In this paper, we investigate the application of some of these techniques to Machine Learning, focusing in particular on a Parallel Tangent (PARTAN) variant of the FW algorithm that has not been previously suggested or studied for this type of problems. We provide experiments both in a standard setting and using a stochastic speed-up technique, showing that the considered algorithms obtain promising results on several medium and large-scale benchmark datasets for SVM classification.

Based on the Aristotelian concept of potentiality vs. actuality allowing for the study of energy and dynamics in language, we propose a field approach to lexical analysis. Falling back on the distributional hypothesis to statistically model word meaning, we used evolving fields as a metaphor to express time-dependent changes in a vector space model by a combination of random indexing and evolving self-organizing maps (ESOM). To monitor semantic drifts within the observation period, an experiment was carried out on the term space of a collection of 12.8 million Amazon book reviews. For evaluation, the semantic consistency of ESOM term clusters was compared with their respective neighbourhoods in WordNet, and contrasted with distances among term vectors by random indexing. We found that at 0.05 level of significance, the terms in the clusters showed a high level of semantic consistency. Tracking the drift of distributional patterns in the term space across time periods, we found that consistency decreased, but not at a statistically significant level. Our method is highly scalable, with interpretations in philosophy.