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Implementation of deep learning algorithm for automatic detection of brain tumors using intraoperative IR-thermal mapping data

arXiv.org Machine Learning

The efficiency of deep machine learning for automatic delineation of tumor areas has been demonstrated for intraoperative neuronavigation using active IR-mapping with the use of the cold test. The proposed approach employs a matrix IR-imager to remotely register the space-time distribution of surface temperature pattern, which is determined by the dynamics of local cerebral blood flow. The advantages of this technique are non-invasiveness, zero risks for the health of patients and medical staff, low implementation and operational costs, ease and speed of use. Traditional IR-diagnostic technique has a crucial limitation - it involves a diagnostician who determines the boundaries of tumor areas, which gives rise to considerable uncertainty, which can lead to diagnosis errors that are difficult to control. The current study demonstrates that implementing deep learning algorithms allows to eliminate the explained drawback.


Marginal likelihood and model selection for Gaussian latent tree and forest models

arXiv.org Machine Learning

Gaussian latent tree models, or more generally, Gaussian latent forest models have Fisher-information matrices that become singular along interesting submodels, namely, models that correspond to subforests. For these singularities, we compute the real log-canonical thresholds (also known as stochastic complexities or learning coefficients) that quantify the large-sample behavior of the marginal likelihood in Bayesian inference. This provides the information needed for a recently introduced generalization of the Bayesian information criterion. Our mathematical developments treat the general setting of Laplace integrals whose phase functions are sums of squared differences between monomials and constants. We clarify how in this case real log-canonical thresholds can be computed using polyhedral geometry, and we show how to apply the general theory to the Laplace integrals associated with Gaussian latent tree and forest models. In simulations and a data example, we demonstrate how the mathematical knowledge can be applied in model selection.


A Comprehensive Approach to Mode Clustering

arXiv.org Machine Learning

Mode clustering is a nonparametric method for clustering that defines clusters using the basins of attraction of a density estimator's modes. We provide several enhancements to mode clustering: (i) a soft variant of cluster assignment, (ii) a measure of connectivity between clusters, (iii) a technique for choosing the bandwidth, (iv) a method for denoising small clusters, and (v) an approach to visualizing the clusters. Combining all these enhancements gives us a complete procedure for clustering in multivariate problems. We also compare mode clustering to other clustering methods in several examples


Specifying and Staging Mixed-Initiative Dialogs with Program Generation and Transformation

arXiv.org Artificial Intelligence

Specifying and implementing flexible human-computer dialogs, such as those used in kiosks and smart phone apps, is challenging because of the numerous and varied directions in which each user might steer a dialog. The objective of this research is to improve dialog specification and implementation. To do so we enriched a notation based on concepts from programming languages, especially partial evaluation, for specifying a variety of unsolicited reporting, mixed-initiative dialogs in a concise representation that serves as a design for dialog implementation. We also built a dialog mining system that extracts a specification in this notation from requirements. To demonstrate that such a specification provides a design for dialog implementation, we built a system that automatically generates an implementation of the dialog, called a stager, from it. These two components constitute a dialog modeling toolkit that automates dialog specification and implementation. These results provide a proof of concept and demonstrate the study of dialog specification and implementation from a programming languages perspective. The ubiquity of dialogs in domains such as travel, education, and health care combined with the demand for smart phone apps provide a landscape for further investigation of these results.


Information-Theoretic Bounded Rationality

arXiv.org Machine Learning

Bounded rationality, that is, decision-making and planning under resource limitations, is widely regarded as an important open problem in artificial intelligence, reinforcement learning, computational neuroscience and economics. This paper offers a consolidated presentation of a theory of bounded rationality based on information-theoretic ideas. We provide a conceptual justification for using the free energy functional as the objective function for characterizing bounded-rational decisions. This functional possesses three crucial properties: it controls the size of the solution space; it has Monte Carlo planners that are exact, yet bypass the need for exhaustive search; and it captures model uncertainty arising from lack of evidence or from interacting with other agents having unknown intentions. We discuss the single-step decision-making case, and show how to extend it to sequential decisions using equivalence transformations. This extension yields a very general class of decision problems that encompass classical decision rules (e.g.


Inference and Mixture Modeling with the Elliptical Gamma Distribution

arXiv.org Machine Learning

We study modeling and inference with the Elliptical Gamma Distribution (EGD). We consider maximum likelihood (ML) estimation for EGD scatter matrices, a task for which we develop new fixed-point algorithms. Our algorithms are efficient and converge to global optima despite nonconvexity. Moreover, they turn out to be much faster than both a well-known iterative algorithm of Kent & Tyler (1991) and sophisticated manifold optimization algorithms. Subsequently, we invoke our ML algorithms as subroutines for estimating parameters of a mixture of EGDs. We illustrate our methods by applying them to model natural image statistics---the proposed EGD mixture model yields the most parsimonious model among several competing approaches.


Test-Driven Development of ontologies (extended version)

arXiv.org Artificial Intelligence

Emerging ontology authoring methods to add knowledge to an ontology focus on ameliorating the validation bottleneck. The verification of the newly added axiom is still one of trying and seeing what the reasoner says, because a systematic testbed for ontology authoring is missing. We sought to address this by introducing the approach of test-driven development for ontology authoring. We specify 36 generic tests, as TBox queries and TBox axioms tested through individuals, and structure their inner workings in an `open box'-way, which cover the OWL 2 DL language features. This is implemented as a Protege plugin so that one can perform a TDD test as a black box test. We evaluated the two test approaches on their performance. The TBox queries were faster, and that effect is more pronounced the larger the ontology is. We provide a general sequence of a TDD process for ontology engineering as a foundation for a TDD methodology.


Asymptotic Behavior of Mean Partitions in Consensus Clustering

arXiv.org Machine Learning

Although consistency is a minimum requirement of any estimator, little is known about consistency of the mean partition approach in consensus clustering. This contribution studies the asymptotic behavior of mean partitions. We show that under normal assumptions, the mean partition approach is consistent and asymptotic normal. To derive both results, we represent partitions as points of some geometric space, called orbit space. Then we draw on results from the theory of Fr\'echet means and stochastic programming. The asymptotic properties hold for continuous extensions of standard cluster criteria (indices). The results justify consensus clustering using finite but sufficiently large sample sizes. Furthermore, the orbit space framework provides a mathematical foundation for studying further statistical, geometrical, and analytical properties of sets of partitions.


Bayesian anti-sparse coding

arXiv.org Machine Learning

Sparse representations have proven their efficiency in solving a wide class of inverse problems encountered in signal and image processing. Conversely, enforcing the information to be spread uniformly over representation coefficients exhibits relevant properties in various applications such as digital communications. Anti-sparse regularization can be naturally expressed through an $\ell_{\infty}$-norm penalty. This paper derives a probabilistic formulation of such representations. A new probability distribution, referred to as the democratic prior, is first introduced. Its main properties as well as three random variate generators for this distribution are derived. Then this probability distribution is used as a prior to promote anti-sparsity in a Gaussian linear inverse problem, yielding a fully Bayesian formulation of anti-sparse coding. Two Markov chain Monte Carlo (MCMC) algorithms are proposed to generate samples according to the posterior distribution. The first one is a standard Gibbs sampler. The second one uses Metropolis-Hastings moves that exploit the proximity mapping of the log-posterior distribution. These samples are used to approximate maximum a posteriori and minimum mean square error estimators of both parameters and hyperparameters. Simulations on synthetic data illustrate the performances of the two proposed samplers, for both complete and over-complete dictionaries. All results are compared to the recent deterministic variational FITRA algorithm.


Pay-As-You-Go Description Logic Reasoning by Coupling Tableau and Saturation Procedures

Journal of Artificial Intelligence Research

Nowadays, saturation-based reasoners for the OWL EL profile of the Web Ontology Language are able to handle large ontologies such as SNOMED very efficiently. However, it is currently unclear how saturation-based reasoning procedures can be extended to very expressive Description Logics such as SROIQ--the logical underpinning of the current and second iteration of the Web Ontology Language. Tableau-based procedures, on the other hand, are not limited to specific Description Logic languages or OWL profiles, but even highly optimised tableau-based reasoners might not be efficient enough to handle large ontologies such as SNOMED. In this paper, we present an approach for tightly coupling tableau- and saturation-based procedures that we implement in the OWL DL reasoner Konclude. Our detailed evaluation shows that this combination significantly improves the reasoning performance for a wide range of ontologies.