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Stochastic Variational Deep Kernel Learning

Neural Information Processing Systems

Deep kernel learning combines the non-parametric flexibility of kernel methods with the inductive biases of deep learning architectures. We propose a novel deep kernel learning model and stochastic variational inference procedure which generalizes deep kernel learning approaches to enable classification, multi-task learning, additive covariance structures, and stochastic gradient training. Specifically, we apply additive base kernels to subsets of output features from deep neural architectures, and jointly learn the parameters of the base kernels and deep network through a Gaussian process marginal likelihood objective. Within this framework, we derive an efficient form of stochastic variational inference which leverages local kernel interpolation, inducing points, and structure exploiting algebra. We show improved performance over stand alone deep networks, SVMs, and state of the art scalable Gaussian processes on several classification benchmarks, including an airline delay dataset containing 6 million training points, CIFAR, and ImageNet.


General Tensor Spectral Co-clustering for Higher-Order Data

Neural Information Processing Systems

Spectral clustering and co-clustering are well-known techniques in data analysis, and recent work has extended spectral clustering to square, symmetric tensors and hypermatrices derived from a network. We develop a new tensor spectral co-clustering method that simultaneously clusters the rows, columns, and slices of a nonnegative three-mode tensor and generalizes to tensors with any number of modes. The algorithm is based on a new random walk model which we call the super-spacey random surfer. We show that our method out-performs state-of-the-art co-clustering methods on several synthetic datasets with ground truth clusters and then use the algorithm to analyze several real-world datasets.


Selective inference for group-sparse linear models

Neural Information Processing Systems

We develop tools for selective inference in the setting of group sparsity, including the construction of confidence intervals and p-values for testing selected groups of variables. Our main technical result gives the precise distribution of the magnitude of the projection of the data onto a given subspace, and enables us to develop inference procedures for a broad class of group-sparse selection methods, including the group lasso, iterative hard thresholding, and forward stepwise regression. We give numerical results to illustrate these tools on simulated data and on health record data.


Breaking the Bandwidth Barrier: Geometrical Adaptive Entropy Estimation

Neural Information Processing Systems

Estimators of information theoretic measures such as entropy and mutual information from samples are a basic workhorse for many downstream applications in modern data science. State of the art approaches have been either geometric (nearest neighbor (NN) based) or kernel based (with bandwidth chosen to be data independent and vanishing sub linearly in the sample size). In this paper we combine both these approaches to design new estimators of entropy and mutual information that strongly outperform all state of the art methods. Our estimator uses bandwidth choice of fixed $k$-NN distances; such a choice is both data dependent and linearly vanishing in the sample size and necessitates a bias cancellation term that is universal and independent of the underlying distribution. As a byproduct, we obtain a unified way of obtaining both kernel and NN estimators. The corresponding theoretical contribution relating the geometry of NN distances to asymptotic order statistics is of independent mathematical interest.


Deep Learning for Predicting Human Strategic Behavior

Neural Information Processing Systems

Predicting the behavior of human participants in strategic settings is an important problem in many domains. Most existing work either assumes that participants are perfectly rational, or attempts to directly model each participant's cognitive processes based on insights from cognitive psychology and experimental economics. In this work, we present an alternative, a deep learning approach that automatically performs cognitive modeling without relying on such expert knowledge. We introduce a novel architecture that allows a single network to generalize across different input and output dimensions by using matrix units rather than scalar units, and show that its performance significantly outperforms that of the previous state of the art, which relies on expert-constructed features.


Stein Variational Gradient Descent: A General Purpose Bayesian Inference Algorithm

Neural Information Processing Systems

We propose a general purpose variational inference algorithm that forms a natural counterpart of gradient descent for optimization. Our method iteratively transports a set of particles to match the target distribution, by applying a form of functional gradient descent that minimizes the KL divergence. Empirical studies are performed on various real world models and datasets, on which our method is competitive with existing state-of-the-art methods. The derivation of our method is based on a new theoretical result that connects the derivative of KL divergence under smooth transforms with Steinโ€™s identity and a recently proposed kernelized Stein discrepancy, which is of independent interest.


Clustering with Bregman Divergences: an Asymptotic Analysis

Neural Information Processing Systems

Clustering, in particular $k$-means clustering, is a central topic in data analysis. Clustering with Bregman divergences is a recently proposed generalization of $k$-means clustering which has already been widely used in applications. In this paper we analyze theoretical properties of Bregman clustering when the number of the clusters $k$ is large. We establish quantization rates and describe the limiting distribution of the centers as $k\to \infty$, extending well-known results for $k$-means clustering.


Learning Bayesian networks with ancestral constraints

Neural Information Processing Systems

We consider the problem of learning Bayesian networks optimally, when subject to background knowledge in the form of ancestral constraints. Our approach is based on a recently proposed framework for optimal structure learning based on non-decomposable scores, which is general enough to accommodate ancestral constraints. The proposed framework exploits oracles for learning structures using decomposable scores, which cannot accommodate ancestral constraints since they are non-decomposable. We show how to empower these oracles by passing them decomposable constraints that they can handle, which are inferred from ancestral constraints that they cannot handle. Empirically, we demonstrate that our approach can be orders-of-magnitude more efficient than alternative frameworks, such as those based on integer linear programming.


Hierarchical Clustering via Spreading Metrics

Neural Information Processing Systems

We study the cost function for hierarchical clusterings introduced by [Dasgupta, 2015] where hierarchies are treated as first-class objects rather than deriving their cost from projections into flat clusters. It was also shown in [Dasgupta, 2015] that a top-down algorithm returns a hierarchical clustering of cost at most \(O\left(\alpha_n \log n\right)\) times the cost of the optimal hierarchical clustering, where \(\alpha_n\) is the approximation ratio of the Sparsest Cut subroutine used. Thus using the best known approximation algorithm for Sparsest Cut due to Arora-Rao-Vazirani, the top down algorithm returns a hierarchical clustering of cost at most \(O\left(\log^{3/2} n\right)\) times the cost of the optimal solution. We improve this by giving an \(O(\log{n})\)-approximation algorithm for this problem. Our main technical ingredients are a combinatorial characterization of ultrametrics induced by this cost function, deriving an Integer Linear Programming (ILP) formulation for this family of ultrametrics, and showing how to iteratively round an LP relaxation of this formulation by using the idea of \emph{sphere growing} which has been extensively used in the context of graph partitioning. We also prove that our algorithm returns an \(O(\log{n})\)-approximate hierarchical clustering for a generalization of this cost function also studied in [Dasgupta, 2015]. Experiments show that the hierarchies found by using the ILP formulation as well as our rounding algorithm often have better projections into flat clusters than the standard linkage based algorithms. We conclude with an inapproximability result for this problem, namely that no polynomial sized LP or SDP can be used to obtain a constant factor approximation for this problem.


Finding significant combinations of features in the presence of categorical covariates

Neural Information Processing Systems

In high-dimensional settings, where the number of features p is typically much larger than the number of samples n, methods which can systematically examine arbitrary combinations of features, a huge 2^p-dimensional space, have recently begun to be explored. However, none of the current methods is able to assess the association between feature combinations and a target variable while conditioning on a categorical covariate, in order to correct for potential confounding effects. We propose the Fast Automatic Conditional Search (FACS) algorithm, a significant discriminative itemset mining method which conditions on categorical covariates and only scales as O(k log k), where k is the number of states of the categorical covariate. Based on the Cochran-Mantel-Haenszel Test, FACS demonstrates superior speed and statistical power on simulated and real-world datasets compared to the state of the art, opening the door to numerous applications in biomedicine.