Microarray is one of the essential technologies used by the biologist to measure genome-wide expression levels of genes in a particular organism under some particular conditions or stimuli. As microarrays technologies have become more prevalent, the challenges of analyzing these data for getting better insight about biological processes have essentially increased. Due to availability of artificial intelligence based sophisticated computational techniques, such as artificial neural networks, fuzzy logic, genetic algorithms, and many other nature-inspired algorithms, it is possible to analyse microarray gene expression data in more better way. Here, we reviewed artificial intelligence based techniques for the analysis of microarray gene expression data. Further, challenges in the field and future work direction have also been suggested.

The objective in extreme multi-label learning is to train a classifier that can automatically tag a novel data point with the most relevant subset of labels from an extremely large label set. Embedding based approaches make training and prediction tractable by assuming that the training label matrix is low-rank and hence the effective number of labels can be reduced by projecting the high dimensional label vectors onto a low dimensional linear subspace. Still, leading embedding approaches have been unable to deliver high prediction accuracies or scale to large problems as the low rank assumption is violated in most real world applications. This paper develops the X-One classifier to address both limitations. The main technical contribution in X-One is a formulation for learning a small ensemble of local distance preserving embeddings which can accurately predict infrequently occurring (tail) labels. This allows X-One to break free of the traditional low-rank assumption and boost classification accuracy by learning embeddings which preserve pairwise distances between only the nearest label vectors. We conducted extensive experiments on several real-world as well as benchmark data sets and compared our method against state-of-the-art methods for extreme multi-label classification. Experiments reveal that X-One can make significantly more accurate predictions then the state-of-the-art methods including both embeddings (by as much as 35%) as well as trees (by as much as 6%). X-One can also scale efficiently to data sets with a million labels which are beyond the pale of leading embedding methods.

Spatio-temporal point process models play a central role in the analysis of spatially distributed systems in several disciplines. Yet, scalable inference remains computa- tionally challenging both due to the high resolution modelling generally required and the analytically intractable likelihood function. Here, we exploit the sparsity structure typical of (spatially) discretised log-Gaussian Cox process models by using approximate message-passing algorithms. The proposed algorithms scale well with the state dimension and the length of the temporal horizon with moderate loss in distributional accuracy. They hence provide a flexible and faster alternative to both non-linear filtering-smoothing type algorithms and to approaches that implement the Laplace method or expectation propagation on (block) sparse latent Gaussian models. We infer the parameters of the latent Gaussian model using a structured variational Bayes approach. We demonstrate the proposed framework on simulation studies with both Gaussian and point-process observations and use it to reconstruct the conflict intensity and dynamics in Afghanistan from the WikiLeaks Afghan War Diary.

Recent work on language modelling has shifted focus from count-based models to neural models. In these works, the words in each sentence are always considered in a left-to-right order. In this paper we show how we can improve the performance of the recurrent neural network (RNN) language model by incorporating the syntactic dependencies of a sentence, which have the effect of bringing relevant contexts closer to the word being predicted. We evaluate our approach on the Microsoft Research Sentence Completion Challenge and show that the dependency RNN proposed improves over the RNN by about 10 points in accuracy. Furthermore, we achieve results comparable with the state-of-the-art models on this task.

This paper discusses the effect of hubness in zero-shot learning, when ridge regression is used to find a mapping between the example space to the label space. Contrary to the existing approach, which attempts to find a mapping from the example space to the label space, we show that mapping labels into the example space is desirable to suppress the emergence of hubs in the subsequent nearest neighbor search step. Assuming a simple data model, we prove that the proposed approach indeed reduces hubness. This was verified empirically on the tasks of bilingual lexicon extraction and image labeling: hubness was reduced with both of these tasks and the accuracy was improved accordingly.

Decentralized POMDPs provide an expressive framework for multiagent sequential decision making. However, the complexity of these models---NEXP-Complete even for two agents---has limited their scalability. We present a promising new class of approximation algorithms by developing novel connections between multiagent planning and machine learning. We show how the multiagent planning problem can be reformulated as inference in a mixture of dynamic Bayesian networks (DBNs). This planning-as-inference approach paves the way for the application of efficient inference techniques in DBNs to multiagent decision making. To further improve scalability, we identify certain conditions that are sufficient to extend the approach to multiagent systems with dozens of agents. Specifically, we show that the necessary inference within the expectation-maximization framework can be decomposed into processes that often involve a small subset of agents, thereby facilitating scalability. We further show that a number of existing multiagent planning models satisfy these conditions. Experiments on large planning benchmarks confirm the benefits of our approach in terms of runtime and scalability with respect to existing techniques.

We study the $K$-armed dueling bandit problem, a variation of the standard stochastic bandit problem where the feedback is limited to relative comparisons of a pair of arms. We introduce a tight asymptotic regret lower bound that is based on the information divergence. An algorithm that is inspired by the Deterministic Minimum Empirical Divergence algorithm (Honda and Takemura, 2010) is proposed, and its regret is analyzed. The proposed algorithm is found to be the first one with a regret upper bound that matches the lower bound. Experimental comparisons of dueling bandit algorithms show that the proposed algorithm significantly outperforms existing ones.

We address the problem of belief revision of logic programs, i.e., how to incorporate to a logic program P a new logic program Q. Based on the structure of SE interpretations, Delgrande et al. adapted the well-known AGM framework to logic program (LP) revision. They identified the rational behavior of LP revision and introduced some specific operators. In this paper, a constructive characterization of all rational LP revision operators is given in terms of orderings over propositional interpretations with some further conditions specific to SE interpretations. It provides an intuitive, complete procedure for the construction of all rational LP revision operators and makes easier the comprehension of their semantic and computational properties. We give a particular consideration to logic programs of very general form, i.e., the generalized logic programs (GLPs). We show that every rational GLP revision operator is derived from a propositional revision operator satisfying the original AGM postulates. Interestingly, the further conditions specific to GLP revision are independent from the propositional revision operator on which a GLP revision operator is based. Taking advantage of our characterization result, we embed the GLP revision operators into structures of Boolean lattices, that allow us to bring to light some potential weaknesses in the adapted AGM postulates. To illustrate our claim, we introduce and characterize axiomatically two specific classes of (rational) GLP revision operators which arguably have a drastic behavior. We additionally consider two more restricted forms of logic programs, i.e., the disjunctive logic programs (DLPs) and the normal logic programs (NLPs) and adapt our characterization result to DLP and NLP revision operators.

This paper explores the use of general-purpose machine translation (MT) in assisting the users of computer-aided translation (CAT) systems based on translation memory (TM) to identify the target words in the translation proposals that need to be changed (either replaced or removed) or kept unedited, a task we term as "word-keeping recommendation". MT is used as a black box to align source and target sub-segments on the fly in the translation units (TUs) suggested to the user. Source-language (SL) and target-language (TL) segments in the matching TUs are segmented into overlapping sub-segments of variable length and machine-translated into the TL and the SL, respectively. The bilingual sub-segments obtained and the matching between the SL segment in the TU and the segment to be translated are employed to build the features that are then used by a binary classifier to determine the target words to be changed and those to be kept unedited. In this approach, MT results are never presented to the translator. Two approaches are presented in this work: one using a word-keeping recommendation system which can be trained on the TM used with the CAT system, and a more basic approach which does not require any training. Experiments are conducted by simulating the translation of texts in several language pairs with corpora belonging to different domains and using three different MT systems. We compare the performance obtained to that of previous works that have used statistical word alignment for word-keeping recommendation, and show that the MT-based approaches presented in this paper are more accurate in most scenarios. In particular, our results confirm that the MT-based approaches are better than the alignment-based approach when using models trained on out-of-domain TMs. Additional experiments were performed to check how dependent the MT-based recommender is on the language pair and MT system used for training. These experiments confirm a high degree of reusability of the recommendation models across various MT systems, but a low level of reusability across language pairs.

The famous archetypical NP-complete problem of Boolean satisfiability (SAT) and its PSPACE-complete generalization of quantified Boolean satisfiability (QSAT) have become central declarative programming paradigms through which real-world instances of various computationally hard problems can be efficiently solved. This success has been achieved through several breakthroughs in practical implementations of decision procedures for SAT and QSAT, that is, in SAT and QSAT solvers. Here, simplification techniques for conjunctive normal form (CNF) for SAT and for prenex conjunctive normal form (PCNF) for QSAT---the standard input formats of SAT and QSAT solvers---have recently proven very effective in increasing solver efficiency when applied before (i.e., in preprocessing) or during (i.e., in inprocessing) satisfiability search. In this article, we develop and analyze clause elimination procedures for pre- and inprocessing. Clause elimination procedures form a family of (P)CNF formula simplification techniques which remove clauses that have specific (in practice polynomial-time) redundancy properties while maintaining the satisfiability status of the formulas. Extending known procedures such as tautology, subsumption, and blocked clause elimination, we introduce novel elimination procedures based on asymmetric variants of these techniques, and also develop a novel family of so-called covered clause elimination procedures, as well as natural liftings of the CNF-level procedures to PCNF. We analyze the considered clause elimination procedures from various perspectives. Furthermore, for the variants not preserving logical equivalence under clause elimination, we show how to reconstruct solutions to original CNFs from satisfying assignments to simplified CNFs, which is important for practical applications for the procedures. Complementing the more theoretical analysis, we present results on an empirical evaluation on the practical importance of the clause elimination procedures in terms of the effect on solver runtimes on standard real-world application benchmarks. It turns out that the importance of applying the clause elimination procedures developed in this work is empirically emphasized in the context of state-of-the-art QSAT solving.