Enzyme-catalyzed protein cleavage is essential for many biological functions. Accurate prediction of cleavage sites can facilitate various applications such as drug development, enzyme design, and a deeper understanding of biological mechanisms. However, most existing models are restricted to an individual enzyme, which neglects shared knowledge of enzymes and fails to generalize to novel enzymes. Thus, we introduce a unified protein cleavage site predictor named UniZyme, which can generalize across diverse enzymes. To enhance the enzyme encoding for the protein cleavage site prediction, UniZyme employs a novel biochemically-informed model architecture along with active-site knowledge of proteolytic enzymes. Extensive experiments demonstrate that UniZyme achieves high accuracy in predicting cleavage sites across a range of proteolytic enzymes, including unseen enzymes. The code is available in https://github.com/Ao-LiChen/UniZyme.

Current document retrieval-augmented generation (DocRAG) Therefore, the number of female respondents who never listened to theradio is: Number of females who never listened = 2,001 * 0.557 = 1,115 methods remain limited by their text-centric approaches, frequently missing "text12": [ "The table provides a

Multi-view clustering aims to enhance clustering performance by leveraging information from diverse sources. However, its practical application is often hindered by a barrier: the lack of correspondences across views. This paper focuses on the understudied problem of fully incomplete multi-view clustering (FIMC), a scenario where existing methods fail due to their reliance on partial alignment. To address this problem, we introduce the Contrastive Prototype Matching Network (CPMN), a novel framework that establishes a new paradigm for cross-view alignment based on matching high-level categorical structures. Instead of aligning individual instances, CPMN performs a more robust cluster prototype alignment. CPMN first employs a correspondence-free graph contrastive learning approach, leveraging mutual k-nearest neighbors (MNN) to uncover intrinsic data structures and establish initial prototypes from entirely unpaired views. Building on the prototypes, we introduce a cross-view prototype graph matching stage to resolve category misalignment and forge a unified clustering structure. Finally, guided by this alignment, we devise a prototype-aware contrastive learning mechanism to promote semantic consistency, replacing the reliance on the initial MNN-based structural similarity. Extensive experiments on benchmark datasets demonstrate that our method significantly outperforms various baselines and ablation variants, validating its effectiveness.

However, existing algorithms either require strict monotonicity or only guarantee the convergence of averaged iterates, as in Fictitious Play in continuous time. We address this gap with the following theoretical result. First, we prove that the last-iterated policy of a proximal-point (PP) update with KL regularization converges to an equilibrium of MFG under non-strict monotonicity. Second, we see that each PP update is equivalent to finding the equilibria of a KL-regularized MFG. We then prove that this equilibrium can be found using Mirror Descent (MD) with an exponential last-iterate convergence rate. Building on these insights, we propose the Approximate Proximal-Point (APP) algorithm, which approximately implements the PP update via a small number of MD steps. Numerical experiments on standard benchmarks confirm that the APP algorithm reliably converges to the unregularized mean-field equilibrium without time-averaging.

Prior work (Klochkov & Zhivotovskiy, 2021) establishes at most O(log(n)/n) excess risk bounds via algorithmic stability for strongly-convex learners with high probability. We show that under the similar common assumptions -- PolyakLojasiewicz condition, smoothness, and Lipschitz continous for losses -- rates of O log2(n)/n2 are at most achievable. To our knowledge, our analysis also provides the tightest high-probability bounds for gradient-based generalization gaps in nonconvex settings.

Scaling the effective context length is essential for advancing large language models (LLMs) toward artificial general intelligence (AGI). However, the quadratic increase in computational complexity inherent in traditional attention mechanisms presents a prohibitive overhead. Existing approaches either impose strongly biased structures, such as sink or window attention which are task-specific, or radically modify the attention mechanism into linear approximations, whose performance in complex reasoning tasks remains inadequately explored. In this work, we propose a solution that adheres to the "less structure" principle, allowing the model to determine where to attend autonomously, rather than introducing predefined biases. We introduce Mixture of Block Attention (MoBA), an innovative approach that applies the principles of Mixture of Experts (MoE) to the attention mechanism. This novel architecture demonstrates superior performance on long-context tasks while offering a key advantage: the ability to seamlessly transition between full and sparse attention, enhancing efficiency without the risk of compromising performance. MoBA has already been deployed to handle actual production workloads with long-context requirements, demonstrating significant advancements in efficient attention computation for LLMs. Our code is available at https://github.com/MoonshotAI/MoBA.

Text-to-image (T2I) diffusion models have achieved impressive image generation quality and are increasingly fine-tuned for personalized applications. However, these models often inherit unsafe behaviors from toxic pretraining data, raising growing safety concerns. While recent safety-driven unlearning methods have made promising progress in suppressing model toxicity, they are found to be fragile to downstream fine-tuning, as we reveal that state-of-the-art methods largely fail to retain their effectiveness even when fine-tuned on entirely benign datasets. To mitigate this problem, in this paper, we propose ResAlign, a safety-driven unlearning framework with enhanced resilience against downstream fine-tuning. By modeling downstream fine-tuning as an implicit optimization problem with a Moreau envelope-based reformulation, ResAlign enables efficient gradient estimation to minimize the recovery of harmful behaviors. Additionally, a meta-learning strategy is proposed to simulate a diverse distribution of fine-tuning scenarios to improve generalization. Extensive experiments across a wide range of datasets, fine-tuning methods, and configurations demonstrate that ResAlign consistently outperforms prior unlearning approaches in retaining safety, while effectively preserving benign generation capability. Our code and pretrained models are publicly available here. . Disclaimer: This paper includes AI-generated images containing partially nude human figures and other sensitive content, shown only for research purposes.

Multimodal Large Language Models (MLLMs) have made rapid progress in perception, understanding, and reasoning, yet existing benchmarks fall short in evaluating these abilities under continuous and dynamic real-world video streams. Such settings require models to maintain coherent understanding and reasoning as visual scenes evolve over time. We introduce RTV-Bench, a fine-grained benchmark for real-time video analysis with MLLMs. It is built upon three key principles: multi-timestamp question answering, hierarchical question structures spanning perception and reasoning, and multi-dimensional evaluation of continuous perception, understanding, and reasoning. RTV-Bench comprises 552 diverse videos and 4,608 carefully curated QA pairs covering a wide range of dynamic scenarios. We evaluate a broad range of state-of-the-art MLLMs, including proprietary, open-source offline, and open-source real-time models. Our results show that realtime models generally outperform offline counterparts but still lag behind leading proprietary systems. While scaling model capacity generally yields performance gains, simply increasing the density of sampled input frames does not consistently translate into improved results. These observations suggest inherent limitations in current architectures when handling long-horizon video streams, underscoring the need for models explicitly designed for streaming video processing and analysis.

Multimodal machine learning, mimicking the human brain's ability to integrate various modalities has seen rapid growth. Most previous multimodal models are trained on perfectly paired multimodal input to reach optimal performance. In real-world deployments, however, the presence of modality is highly variable and unpredictable, causing the pre-trained models in suffering significant performance drops and fail to remain robust with dynamic missing modalities circumstances. In this paper, we present a novel Cyclic INformative Learning framework (CyIN) to bridge the gap between complete and incomplete multimodal learning. Specifically, we firstly build an informative latent space by adopting token-and label-level Information Bottleneck (IB) cyclically among various modalities. Capturing task-related features with variational approximation, the informative bottleneck latents are purified for more efficient cross-modal interaction and multimodal fusion. Moreover, to supplement the missing information caused by incomplete multimodal input, we propose cross-modal cyclic translation by reconstruct the missing modalities with the remained ones through forward and reverse propagation process. With the help of the extracted and reconstructed informative latents, CyIN succeeds in jointly optimizing complete and incomplete multimodal learning in one unified model. Extensive experiments on 4 multimodal datasets demonstrate the superior performance of our method in both complete and diverse incomplete scenarios.

Evaluating large language models (LLMs) is crucial for both assessing their capabilities and identifying safety or robustness issues prior to deployment. Reliably measuring abstract and complex phenomena such as'safety' and'robustness' requires strong construct validity, that is, having measures that represent what matters to the phenomenon. With a team of 29 expert reviewers, we conduct a systematic review of 445 LLM benchmarks from leading conferences in natural language processing and machine learning. Across the reviewed articles, we find patterns related to the measured phenomena, tasks, and scoring metrics which undermine the validity of the resulting claims. To address these shortcomings, we provide eight key recommendations and detailed actionable guidance to researchers and practitioners in developing LLM benchmarks.