Quantifying a patient's health status provides clinicians with insight into patient risk, and the ability to better triage and manage resources. Early Warning Scores (EWS) are widely deployed to measure overall health status, and risk of adverse outcomes, in hospital patients. However, current EWS are limited both by their lack of personalisation and use of static observations. We propose a pipeline that groups intensive care unit patients by the trajectories of observations data throughout their stay as a basis for the development of personalised risk predictions. Feature importance is considered to provide model explainability. Using the MIMIC-IV dataset, six clusters were identified, capturing differences in disease codes, observations, lengths of admissions and outcomes. Applying the pipeline to data from just the first four hours of each ICU stay assigns the majority of patients to the same cluster as when the entire stay duration is considered. In-hospital mortality prediction models trained on individual clusters had higher F1 score performance in five of the six clusters when compared against the unclustered patient cohort. The pipeline could form the basis of a clinical decision support tool, working to improve the clinical characterisation of risk groups and the early detection of patient deterioration.

Advances in underwater imaging enable the collection of extensive seafloor image datasets that are necessary for monitoring important benthic ecosystems. The ability to collect seafloor imagery has outpaced our capacity to analyze it, hindering expedient mobilization of this crucial environmental information. Recent machine learning approaches provide opportunities to increase the efficiency with which seafloor image datasets are analyzed, yet large and consistent datasets necessary to support development of such approaches are scarce. Here we present BenthicNet: a global compilation of seafloor imagery designed to support the training and evaluation of large-scale image recognition models. An initial set of over 11.4 million images was collected and curated to represent a diversity of seafloor environments using a representative subset of 1.3 million images. These are accompanied by 2.6 million annotations translated to the CATAMI scheme, which span 190,000 of the images. A large deep learning model was trained on this compilation and preliminary results suggest it has utility for automating large and small-scale image analysis tasks. The compilation and model are made openly available for use by the scientific community at https://doi.org/10.20383/103.0614.

Pathogenic chromosome abnormalities are very common among the general population. While numerical chromosome abnormalities can be quickly and precisely detected, structural chromosome abnormalities are far more complex and typically require considerable efforts by human experts for identification. This paper focuses on investigating the modeling of chromosome features and the identification of chromosomes with structural abnormalities. Most existing data-driven methods concentrate on a single chromosome and consider each chromosome independently, overlooking the crucial aspect of homologous chromosomes. In normal cases, homologous chromosomes share identical structures, with the exception that one of them is abnormal. Therefore, we propose an adaptive method to align homologous chromosomes and diagnose structural abnormalities through homologous similarity. Inspired by the process of human expert diagnosis, we incorporate information from multiple pairs of homologous chromosomes simultaneously, aiming to reduce noise disturbance and improve prediction performance. Extensive experiments on real-world datasets validate the effectiveness of our model compared to baselines.

Vegetation indices allow to efficiently monitor vegetation growth and agricultural activities. Previous generations of satellites were capturing a limited number of spectral bands, and a few expert-designed vegetation indices were sufficient to harness their potential. New generations of multi- and hyperspectral satellites can however capture additional bands, but are not yet efficiently exploited. In this work, we propose an explainable-AI-based method to select and design suitable vegetation indices. We first train a deep neural network using multispectral satellite data, then extract feature importance to identify the most influential bands. We subsequently select suitable existing vegetation indices or modify them to incorporate the identified bands and retrain our model. We validate our approach on a crop classification task. Our results indicate that models trained on individual indices achieve comparable results to the baseline model trained on all bands, while the combination of two indices surpasses the baseline in certain cases.

Machine learning (ML) datasets, often perceived as neutral, inherently encapsulate abstract and disputed social constructs. Dataset curators frequently employ value-laden terms such as diversity, bias, and quality to characterize datasets. Despite their prevalence, these terms lack clear definitions and validation. Our research explores the implications of this issue by analyzing "diversity" across 135 image and text datasets. Drawing from social sciences, we apply principles from measurement theory to identify considerations and offer recommendations for conceptualizing, operationalizing, and evaluating diversity in datasets. Our findings have broader implications for ML research, advocating for a more nuanced and precise approach to handling value-laden properties in dataset construction.

Although Large Language Models (LLMs) have demonstrated strong instruction-following ability to be helpful, they are further supposed to be controlled and guided by rules in real-world scenarios to be safe, and accurate in responses. This demands the possession of rule-following capability of LLMs. However, few works have made a clear evaluation of the rule-following capability of LLMs. Previous studies that try to evaluate the rule-following capability of LLMs fail to distinguish the rule-following scenarios from the instruction-following scenarios. Therefore, this paper first makes a clarification of the concept of rule-following, and curates a comprehensive benchmark, RuleBench, to evaluate a diversified range of rule-following abilities. Our experimental results on a variety of LLMs show that they are still limited in following rules. Our further analysis provides insights into the improvements for LLMs toward a better rule-following intelligent agent. The data and code can be found at: https://anonymous.4open.science/r/llm-rule-following-B3E3/

Large Language Models (LLMs) have revolutionized the field of Natural Language Processing thanks to their ability to reuse knowledge acquired on massive text corpora on a wide variety of downstream tasks, with minimal (if any) tuning steps. At the same time, it has been repeatedly shown that LLMs lack systematic generalization, which allows to extrapolate the learned statistical regularities outside the training distribution. In this work, we offer a systematic benchmarking of GPT-4, one of the most advanced LLMs available, on three algorithmic tasks characterized by the possibility to control the problem difficulty with two parameters. We compare the performance of GPT-4 with that of its predecessor (GPT-3.5) and with a variant of the Transformer-Encoder architecture recently introduced to solve similar tasks, the Neural Data Router. We find that the deployment of advanced prompting techniques allows GPT-4 to reach superior accuracy on all tasks, demonstrating that state-of-the-art LLMs constitute a very strong baseline also in challenging tasks that require systematic generalization.

Large Language Models (LLMs) have demonstrated remarkable capability in a variety of NLP tasks. However, LLMs are also prone to generate nonfactual content. Uncertainty Quantification (UQ) is pivotal in enhancing our understanding of a model's confidence on its generation, thereby aiding in the mitigation of nonfactual outputs. Existing research on UQ predominantly targets short text generation, typically yielding brief, word-limited responses. However, real-world applications frequently necessitate much longer responses. Our study first highlights the limitations of current UQ methods in handling long text generation. We then introduce \textsc{Luq} and its two variations, a series of novel sampling-based UQ approaches specifically designed for long text. Our findings reveal that \textsc{Luq} outperforms existing baseline methods in correlating with the model's factuality scores (negative coefficient of -0.85 observed for Gemini Pro). To further improve the factuality of LLM responses, we propose \textsc{Luq-Ensemble}, a method that ensembles responses from multiple models and selects the response with the lowest uncertainty. The ensembling method greatly improves the response factuality upon the best standalone LLM.

The emergence of Large Language Models (LLMs) has demonstrated promising progress in solving logical reasoning tasks effectively. Several recent approaches have proposed to change the role of the LLM from the reasoner into a translator between natural language statements and symbolic representations which are then sent to external symbolic solvers to resolve. This paradigm has established the current state-of-the-art result in logical reasoning (i.e., deductive reasoning). However, it remains unclear whether the variance in performance of these approaches stems from the methodologies employed or the specific symbolic solvers utilized. There is a lack of consistent comparison between symbolic solvers and how they influence the overall reported performance. This is important, as each symbolic solver also has its own input symbolic language, presenting varying degrees of challenge in the translation process. To address this gap, we perform experiments on 3 deductive reasoning benchmarks with LLMs augmented with widely used symbolic solvers: Z3, Pyke, and Prover9. The tool-executable rates of symbolic translation generated by different LLMs exhibit a near 50% performance variation. This highlights a significant difference in performance rooted in very basic choices of tools. The almost linear correlation between the executable rate of translations and the accuracy of the outcomes from Prover9 highlight a strong alignment between LLMs ability to translate into Prover9 symbolic language, and the correctness of those translations.

This technical report describes the Time Series Optimized Transformer for Observability (Toto), a new state of the art foundation model for time series forecasting developed by Datadog. In addition to advancing the state of the art on generalized time series benchmarks in domains such as electricity and weather, this model is the first general-purpose time series forecasting foundation model to be specifically tuned for observability metrics. Toto was trained on a dataset of one trillion time series data points, the largest among all currently published time series foundation models. Alongside publicly available time series datasets, 75% of the data used to train Toto consists of fully anonymous numerical metric data points from the Datadog platform. In our experiments, Toto outperforms existing time series foundation models on observability data. It does this while also excelling at general-purpose forecasting tasks, achieving state-of-the-art zero-shot performance on multiple open benchmark datasets.