We present ONERULER, a multilingual benchmark designed to evaluate long-context language models across 26 languages. ONERULER adapts the English-only RULER benchmark (Hsieh et al., 2024) by including seven synthetic tasks that test both retrieval and aggregation, including new variations of the "needle-in-a-haystack" task that allow for the possibility of a nonexistent needle. We create ONERULER through a two-step process, first writing English instructions for each task and then collaborating with native speakers to translate them into 25 additional languages. Experiments with both open-weight and closed LLMs reveal a widening performance gap between low- and high-resource languages as context length increases from 8K to 128K tokens. Surprisingly, English is not the top-performing language on long-context tasks (ranked 6th out of 26), with Polish emerging as the top language. Our experiments also show that many LLMs (particularly OpenAI's o3-mini-high) incorrectly predict the absence of an answer, even in high-resource languages. Finally, in cross-lingual scenarios where instructions and context appear in different languages, performance can fluctuate by up to 20% depending on the instruction language. We hope the release of ONERULER will facilitate future research into improving multilingual and cross-lingual long-context training pipelines.

Motivation: PCR is more economical and quicker than Next Generation Sequencing for detecting target organisms, with primer design being a critical step. In epidemiology with rapidly mutating viruses, designing effective primers is challenging. Traditional methods require substantial manual intervention and struggle to ensure effective primer design across different strains. For organisms with large, similar genomes like Escherichia coli and Shigella flexneri, differentiating between species is also difficult but crucial. Results: We developed Primer C-VAE, a model based on a Variational Auto-Encoder framework with Convolutional Neural Networks to identify variants and generate specific primers. Using SARS-CoV-2, our model classified variants (alpha, beta, gamma, delta, omicron) with 98% accuracy and generated variant-specific primers. These primers appeared with >95% frequency in target variants and <5% in others, showing good performance in in-silico PCR tests. For Alpha, Delta, and Omicron, our primer pairs produced fragments <200 bp, suitable for qPCR detection. The model also generated effective primers for organisms with longer gene sequences like E. coli and S. flexneri. Conclusion: Primer C-VAE is an interpretable deep learning approach for developing specific primer pairs for target organisms. This flexible, semi-automated and reliable tool works regardless of sequence completeness and length, allowing for qPCR applications and can be applied to organisms with large and highly similar genomes.

This study explores the prevalence of hate speech (HS) and sentiment in YouTube video comments concerning the Israel-Palestine conflict by analyzing content from both public and private news sources. The research involved annotating 4983 comments for HS and sentiments (neutral, pro-Israel, and pro-Palestine). Subsequently, machine learning (ML) models were developed, demonstrating robust predictive capabilities with area under the receiver operating characteristic (AUROC) scores ranging from 0.83 to 0.90. These models were applied to the extracted comment sections of YouTube videos from public and private sources, uncovering a higher incidence of HS in public sources (40.4%) compared to private sources (31.6%). Sentiment analysis revealed a predominantly neutral stance in both source types, with more pronounced sentiments towards Israel and Palestine observed in public sources. This investigation highlights the dynamic nature of online discourse surrounding the Israel-Palestine conflict and underscores the potential of moderating content in a politically charged environment.

Fine-tuning of Large Language Models (LLMs) for downstream tasks, performed on domain-specific data has shown significant promise. However, commercial use of such LLMs is limited by the high computational cost required for their deployment at scale. On the other hand, small Language Models (LMs) are much more cost effective but have subpar performance in a similar setup. This paper presents our approach to finetuning a small LM, that reaches high accuracy in multiple choice question answering task. We achieve this by improving data quality at each stage of the LM training pipeline. In particular, we start with data structuring resulting in extraction of compact, semantically meaningful text chunks used by a retriever. This allows more efficient knowledge digestion by the LM. Further, we improve the retrieved context by training a lightweight Chunk Re-Ranker (CRR) that generates more accurate relative relevance chunk scores. Finally, we improve the model generalization ability by merging the models fine-tuned with different parameters on different data subsets. We present detailed procedure descriptions, and corresponding experimental findings that show the improvements of each one of the proposed techniques.

Existing model reduction techniques for high-dimensional models of conservative partial differential equations (PDEs) encounter computational bottlenecks when dealing with systems featuring non-polynomial nonlinearities. This work presents a nonlinear model reduction method that employs lifting variable transformations to derive structure-preserving quadratic reduced-order models for conservative PDEs with general nonlinearities. We present an energy-quadratization strategy that defines the auxiliary variable in terms of the nonlinear term in the energy expression to derive an equivalent quadratic lifted system with quadratic system energy. The proposed strategy combined with proper orthogonal decomposition model reduction yields quadratic reduced-order models that conserve the quadratized lifted energy exactly in high dimensions. We demonstrate the proposed model reduction approach on four nonlinear conservative PDEs: the one-dimensional wave equation with exponential nonlinearity, the two-dimensional sine-Gordon equation, the two-dimensional Klein-Gordon equation with parametric dependence, and the two-dimensional Klein-Gordon-Zakharov equations. The numerical results show that the proposed lifting approach is competitive with the state-of-the-art structure-preserving hyper-reduction method in terms of both accuracy and computational efficiency in the online stage while providing significant computational gains in the offline stage.

Text-to-SQL, the task of translating natural language questions into SQL queries, plays a crucial role in enabling non-experts to interact with databases. While recent advancements in large language models (LLMs) have significantly enhanced text-to-SQL performance, existing approaches face notable limitations in real-world text-to-SQL applications. Prompting-based methods often depend on closed-source LLMs, which are expensive, raise privacy concerns, and lack customization. Fine-tuning-based methods, on the other hand, suffer from poor generalizability due to the limited coverage of publicly available training data. To overcome these challenges, we propose a novel and scalable text-to-SQL data synthesis framework for automatically synthesizing large-scale, high-quality, and diverse datasets without extensive human intervention. Using this framework, we introduce SynSQL-2.5M, the first million-scale text-to-SQL dataset, containing 2.5 million samples spanning over 16,000 synthetic databases. Each sample includes a database, SQL query, natural language question, and chain-of-thought (CoT) solution. Leveraging SynSQL-2.5M, we develop OmniSQL, a powerful open-source text-to-SQL model available in three sizes: 7B, 14B, and 32B. Extensive evaluations across nine datasets demonstrate that OmniSQL achieves state-of-the-art performance, matching or surpassing leading closed-source and open-source LLMs, including GPT-4o and DeepSeek-V3, despite its smaller size. We release all code, datasets, and models to support further research.

Current LLM pipelines account for only one possible tokenization for a given string, ignoring exponentially many alternative tokenizations during training and inference. For example, the standard Llama3 tokenization of penguin is [p,enguin], yet [peng,uin] is another perfectly valid alternative. In this paper, we show that despite LLMs being trained solely on one tokenization, they still retain semantic understanding of other tokenizations, raising questions about their implications in LLM safety. Put succinctly, we answer the following question: can we adversarially tokenize an obviously malicious string to evade safety and alignment restrictions? We show that not only is adversarial tokenization an effective yet previously neglected axis of attack, but it is also competitive against existing state-of-the-art adversarial approaches without changing the text of the harmful request. We empirically validate this exploit across three state-of-the-art LLMs and adversarial datasets, revealing a previously unknown vulnerability in subword models.

Geographic distribution shift arises when the distribution of locations on Earth in a training dataset is different from what is seen at test time. The most common approaches to tackling geographic distribution shift treat regions delimited by administrative boundaries such as countries or continents as separate domains and apply standard domain adaptation methods, ignoring geographic coordinates that are often available as metadata. This paper proposes the use of location encoders for training models that are more robust to geographic distribution shift. We show how both simple sine-cosine encoders and pre-trained location encoders can be used to improve standard domain adaptation methods for the special case of geographic distribution shift. Our proposed methods achieve state-of-the-art results on geo-tagged imagery datasets from the WILDS benchmark.

Longitudinal network data are essential for analyzing political, economic, and social systems and processes. In political science, these datasets are often generated through human annotation or supervised machine learning applied to evolving corpora. However, as semantic contexts shift over time, inferring dynamic interaction types on emerging issues among a diverse set of entities poses significant challenges, particularly in maintaining timely and consistent annotations. This paper presents the Expert-Augmented LLM Annotation (EALA) approach, which leverages Large Language Models (LLMs) in combination with historically annotated data and expert-constructed codebooks to extrapolate and extend datasets into future periods. We evaluate the performance and reliability of EALA using a dataset of climate negotiations. Our findings demonstrate that EALA effectively predicts nuanced interactions between negotiation parties and captures the evolution of topics over time. At the same time, we identify several limitations inherent to LLM-based annotation, highlighting areas for further improvement. Given the wide availability of codebooks and annotated datasets, EALA holds substantial promise for advancing research in political science and beyond.

Hypertensive retinopathy (HR) is a severe eye disease that may cause permanent vision loss if not diagnosed early. Traditional diagnostic methods are time-consuming and subjective, highlighting the need for an automated, reliable system. Existing studies often use a single Deep Learning (DL) model, struggling to distinguish HR stages. This study introduces a three-stage approach to enhance HR diagnosis accuracy. Initially, 14 CNN models were tested, identifying DenseNet169, MobileNet, and ResNet152 as the most effective. DenseNet169 achieved 87.73% accuracy, 87.75% precision, 87.73% recall, 87.67% F1-score, and 0.8359 Cohen's Kappa. MobileNet followed with 86.40% accuracy, 86.60% precision, 86.40% recall, 86.31% F1-score, and 0.8180 Cohen's Kappa. ResNet152 ranked third with 85.87% accuracy, 86.01% precision, 85.87% recall, 85.83% F1-score, and 0.8188 Cohen's Kappa. In the second stage, deep features from these models were fused and classified using Machine Learning (ML) algorithms (SVM, RF, XGBoost). SVM (sigmoid kernel) performed best with 92.00% accuracy, 91.93% precision, 92.00% recall, 91.91% F1-score, and 0.8930 Cohen's Kappa. The third stage applied meta-heuristic optimization (GA, ABC, PSO, HHO) for feature selection. HHO yielded 94.66% accuracy, precision, and recall, 94.64% F1-score, and 0.9286 Cohen's Kappa. The proposed approach surpassed single CNN models and previous studies in HR diagnosis accuracy and generalization.