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Physics-informed neural networks to learn cardiac fiber orientation from multiple electroanatomical maps

arXiv.org Artificial Intelligence

We propose FiberNet, a method to estimate \emph{in-vivo} the cardiac fiber architecture of the human atria from multiple catheter recordings of the electrical activation. Cardiac fibers play a central role in the electro-mechanical function of the heart, yet they are difficult to determine in-vivo, and hence rarely truly patient-specific in existing cardiac models. FiberNet learns the fiber arrangement by solving an inverse problem with physics-informed neural networks. The inverse problem amounts to identifying the conduction velocity tensor of a cardiac propagation model from a set of sparse activation maps. The use of multiple maps enables the simultaneous identification of all the components of the conduction velocity tensor, including the local fiber angle. We extensively test FiberNet on synthetic 2-D and 3-D examples, diffusion tensor fibers, and a patient-specific case. We show that 3 maps are sufficient to accurately capture the fibers, also in the presence of noise. With fewer maps, the role of regularization becomes prominent. Moreover, we show that the fitted model can robustly reproduce unseen activation maps. We envision that FiberNet will help the creation of patient-specific models for personalized medicine. The full code is available at http://github.com/fsahli/FiberNet.


Netflix's em Resident Evil /em is Surprisingly Good. There's One Scene That Proves It.

Slate

As Netflix's profits have begun to wane, some business analysts have argued that, when compared to rivals like HBO Max or Amazon Prime, Netflix has a "quantity over quality" problem with its content. Critics have joined this bandwagon, turning on the streaming service's wide array of original material. This trend manifested itself most recently in the wake of the release of the television series Resident Evil, loosely based on the Capcom survival-horror video game from the 1990s. A week after its July 14th release, the show has been snubbed by critics, earning a 51% on Rotten Tomatoes, as well as absolutely savaged by viewers who rated the show on that website, leaving a bloodbath of one-star reviews and an "Audience Score" of 26%. Given the history of the Resident Evil movie franchise--six schlocky Milla Jovovich vehicles that contained, in total, exactly one memorable scene; one forgettable 2021 prequel--this kind of critical drubbing might be the expected outcome.


Tutor (External Contractor) - Programming for Data Science (Nigeria)

#artificialintelligence

In our mission toward powering careers through tech education, we are doubling down on the support that we offer to our students. As a part of this, we want to extend an opportunity for you to become a Tutor for the Digital Marketing program with Udacity. Udacity is committed to creating economic empowerment and a more diverse and equitable world. To ensure that our products and culture continue to incorporate everyone's perspectives and experience we never discriminate on the basis of race, color, religion, sex, gender, gender identity or expression, sexual orientation, marital status, national origin, ancestry, disability, medical condition (including genetic information), age, veteran status or military status, denial of pregnancy disability leave or reasonable accommodation.


AI for Population and Global Health in Radiology

#artificialintelligence

Udunna C. Anazodo, PhD, is an assistant professor of neurology and neurosurgery at the Montreal Neurological Institute at McGill University. She is the founder and chair of the Consortium for Advancement of MRI Education and Research in Africa (CAMERA) and is currently leading efforts to create the Africa Neuroimaging Archive (AfNiA). Her research interests include diagnostic image analysis using artificial intelligence methods to enable quantitative PET and MRI for population neuroscience and global health. Maruf Adewole, MSc, is a medical physicist. He holds a bachelor's degree in physics and master's degree in medical physics from the Federal University of Technology Akure and University of Lagos, Nigeria, respectively.


The virtuous cycle of AI research

#artificialintelligence

Many recent research efforts seek to construct neural networks capable of executing algorithmic computation, primarily to endow them with reasoning capabilities โ€“ which neural networks typically lack. Critically, every one of these papers generates its own dataset, which makes it hard to track progress, and raises the barrier of entry into the field. The CLRS benchmark, with its readily exposed dataset generators, and publicly available code, seeks to improve on these challenges. We've already seen a great level of enthusiasm from the community, and we hope to channel it even further during ICML. The main dream of our research on algorithmic reasoning is to capture the computation of classical algorithms inside high-dimensional neural executors.


Transformer with Implicit Edges for Particle-based Physics Simulation

arXiv.org Artificial Intelligence

Particle-based systems provide a flexible and unified way to simulate physics systems with complex dynamics. Most existing data-driven simulators for particle-based systems adopt graph neural networks (GNNs) as their network backbones, as particles and their interactions can be naturally represented by graph nodes and graph edges. However, while particle-based systems usually contain hundreds even thousands of particles, the explicit modeling of particle interactions as graph edges inevitably leads to a significant computational overhead, due to the increased number of particle interactions. Consequently, in this paper we propose a novel Transformer-based method, dubbed as Transformer with Implicit Edges (TIE), to capture the rich semantics of particle interactions in an edge-free manner. The core idea of TIE is to decentralize the computation involving pair-wise particle interactions into per-particle updates. This is achieved by adjusting the self-attention module to resemble the update formula of graph edges in GNN. To improve the generalization ability of TIE, we further amend TIE with learnable material-specific abstract particles to disentangle global material-wise semantics from local particle-wise semantics. We evaluate our model on diverse domains of varying complexity and materials. Compared with existing GNN-based methods, without bells and whistles, TIE achieves superior performance and generalization across all these domains. Codes and models are available at https://github.com/ftbabi/TIE_ECCV2022.git.


Analyzing and Mitigating Interference in Neural Architecture Search

arXiv.org Artificial Intelligence

Weight sharing is a popular approach to reduce the cost of neural architecture search (NAS) by reusing the weights of shared operators from previously trained child models. However, the rank correlation between the estimated accuracy and ground truth accuracy of those child models is low due to the interference among different child models caused by weight sharing. In this paper, we investigate the interference issue by sampling different child models and calculating the gradient similarity of shared operators, and observe: 1) the interference on a shared operator between two child models is positively correlated with the number of different operators; 2) the interference is smaller when the inputs and outputs of the shared operator are more similar. Inspired by these two observations, we propose two approaches to mitigate the interference: 1) MAGIC-T: rather than randomly sampling child models for optimization, we propose a gradual modification scheme by modifying one operator between adjacent optimization steps to minimize the interference on the shared operators; 2) MAGIC-A: forcing the inputs and outputs of the operator across all child models to be similar to reduce the interference. Experiments on a BERT search space verify that mitigating interference via each of our proposed methods improves the rank correlation of super-pet and combining both methods can achieve better results. Our discovered architecture outperforms RoBERTa$_{\rm base}$ by 1.1 and 0.6 points and ELECTRA$_{\rm base}$ by 1.6 and 1.1 points on the dev and test set of GLUE benchmark. Extensive results on the BERT compression, reading comprehension and ImageNet task demonstrate the effectiveness and generality of our proposed methods.


Making the Most of Text Semantics to Improve Biomedical Vision--Language Processing

arXiv.org Artificial Intelligence

Multi-modal data abounds in biomedicine, such as radiology images and reports. Interpreting this data at scale is essential for improving clinical care and accelerating clinical research. Biomedical text with its complex semantics poses additional challenges in vision--language modelling compared to the general domain, and previous work has used insufficiently adapted models that lack domain-specific language understanding. In this paper, we show that principled textual semantic modelling can substantially improve contrastive learning in self-supervised vision--language processing. We release a language model that achieves state-of-the-art results in radiology natural language inference through its improved vocabulary and novel language pretraining objective leveraging semantics and discourse characteristics in radiology reports. Further, we propose a self-supervised joint vision--language approach with a focus on better text modelling. It establishes new state of the art results on a wide range of publicly available benchmarks, in part by leveraging our new domain-specific language model. We release a new dataset with locally-aligned phrase grounding annotations by radiologists to facilitate the study of complex semantic modelling in biomedical vision--language processing. A broad evaluation, including on this new dataset, shows that our contrastive learning approach, aided by textual-semantic modelling, outperforms prior methods in segmentation tasks, despite only using a global-alignment objective.


A Primer on Topological Data Analysis to Support Image Analysis Tasks in Environmental Science

arXiv.org Artificial Intelligence

Topological data analysis (TDA) is a tool from data science and mathematics that is beginning to make waves in environmental science. In this work, we seek to provide an intuitive and understandable introduction to a tool from TDA that is particularly useful for the analysis of imagery, namely persistent homology. We briefly discuss the theoretical background but focus primarily on understanding the output of this tool and discussing what information it can glean. To this end, we frame our discussion around a guiding example of classifying satellite images from the Sugar, Fish, Flower, and Gravel Dataset produced for the study of mesocale organization of clouds by Rasp et. al. in 2020 (arXiv:1906:01906). We demonstrate how persistent homology and its vectorization, persistence landscapes, can be used in a workflow with a simple machine learning algorithm to obtain good results, and explore in detail how we can explain this behavior in terms of image-level features. One of the core strengths of persistent homology is how interpretable it can be, so throughout this paper we discuss not just the patterns we find, but why those results are to be expected given what we know about the theory of persistent homology. Our goal is that a reader of this paper will leave with a better understanding of TDA and persistent homology, be able to identify problems and datasets of their own for which persistent homology could be helpful, and gain an understanding of results they obtain from applying the included GitHub example code.


An advanced combination of semi-supervised Normalizing Flow & Yolo (YoloNF) to detect and recognize vehicle license plates

arXiv.org Artificial Intelligence

Fully Automatic License Plate Recognition (ALPR) has been a frequent research topic due to several practical applications. However, many of the current solutions are still not robust enough in real situations, commonly depending on many constraints. This paper presents a robust and efficient ALPR system based on the state-of-the-art YOLO object detector and Normalizing flows. The model uses two new strategies. Firstly, a two-stage network using YOLO and a normalization flow-based model for normalization to detect Licenses Plates (LP) and recognize the LP with numbers and Arabic characters. Secondly, Multi-scale image transformations are implemented to provide a solution to the problem of the YOLO cropped LP detection including significant background noise. Furthermore, extensive experiments are led on a new dataset with realistic scenarios, we introduce a larger public annotated dataset collected from Moroccan plates. We demonstrate that our proposed model can learn on a small number of samples free of single or multiple characters. The dataset will also be made publicly available to encourage further studies and research on plate detection and recognition.