Lexically constrained text generation is one of the constrained text generation tasks, which aims to generate text that covers all the given constraint lexicons. While the existing approaches tackle this problem using a lexically constrained beam search algorithm or dedicated model using non-autoregressive decoding, there is a trade-off between the generated text quality and the hard constraint satisfaction. We introduce AutoTemplate, a simple yet effective lexically constrained text generation framework divided into template generation and lexicalization tasks. The template generation is to generate the text with the placeholders, and lexicalization replaces them into the constraint lexicons to perform lexically constrained text generation. We conducted the experiments on two tasks: keywords-to-sentence generations and entity-guided summarization. Experimental results show that the AutoTemplate outperforms the competitive baselines on both tasks while satisfying the hard lexical constraints.

The massive amount of genomic data appearing for SARS-CoV-2 since the beginning of the COVID-19 pandemic has challenged traditional methods for studying its dynamics. As a result, new methods such as Pangolin, which can scale to the millions of samples of SARS-CoV-2 currently available, have appeared. Such a tool is tailored to take as input assembled, aligned and curated full-length sequences, such as those found in the GISAID database. As high-throughput sequencing technologies continue to advance, such assembly, alignment and curation may become a bottleneck, creating a need for methods which can process raw sequencing reads directly. In this paper, we propose Reads2Vec, an alignment-free embedding approach that can generate a fixed-length feature vector representation directly from the raw sequencing reads without requiring assembly. Furthermore, since such an embedding is a numerical representation, it may be applied to highly optimized classification and clustering algorithms. Experiments on simulated data show that our proposed embedding obtains better classification results and better clustering properties contrary to existing alignment-free baselines. In a study on real data, we show that alignment-free embeddings have better clustering properties than the Pangolin tool and that the spike region of the SARS-CoV-2 genome heavily informs the alignment-free clusterings, which is consistent with current biological knowledge of SARS-CoV-2.

We study the problem of allocating limited supply of medical resources in developing countries, in particular, Sierra Leone. We address this problem by combining machine learning (to predict demand) with optimization (to optimize allocations). A key challenge is the need to align the loss function used to train the machine learning model with the decision loss associated with the downstream optimization problem. Traditional solutions have limited flexibility in the model architecture and scale poorly to large datasets. We propose a decision-aware learning algorithm that uses a novel Taylor expansion of the optimal decision loss to derive the machine learning loss. Importantly, our approach only requires a simple re-weighting of the training data, ensuring it is both flexible and scalable, e.g., we incorporate it into a random forest trained using a multitask learning framework. We apply our framework to optimize the distribution of essential medicines in collaboration with policymakers in Sierra Leone; highly uncertain demand and limited budgets currently result in excessive unmet demand. Out-of-sample results demonstrate that our end-to-end approach can significantly reduce unmet demand across 1040 health facilities throughout Sierra Leone.

Multilingual pre-trained models exhibit zero-shot cross-lingual transfer, where a model fine-tuned on a source language achieves surprisingly good performance on a target language. While studies have attempted to understand transfer, they focus only on MLM, and the large number of differences between natural languages makes it hard to disentangle the importance of different properties. In this work, we specifically highlight the importance of word embedding alignment by proposing a pre-training objective (ALIGN-MLM) whose auxiliary loss guides similar words in different languages to have similar word embeddings. ALIGN-MLM either outperforms or matches three widely adopted objectives (MLM, XLM, DICT-MLM) when we evaluate transfer between pairs of natural languages and their counterparts created by systematically modifying specific properties like the script. In particular, ALIGN-MLM outperforms XLM and MLM by 35 and 30 F1 points on POS-tagging for transfer between languages that differ both in their script and word order (left-to-right v.s. right-to-left). We also show a strong correlation between alignment and transfer for all objectives (e.g., rho=0.727 for XNLI), which together with ALIGN-MLM's strong performance calls for explicitly aligning word embeddings for multilingual models.

Abstract--Yield forecasting is a critical first step necessary for yield optimisation, with important consequences for the broader food supply chain, procurement, price-negotiation, logistics, and supply. However yield forecasting is notoriously difficult, and oft-inaccurate. Premonition Net is a multi-timeline, time sequence ingesting approach towards processing the past, the present, and premonitions of the future. We show how this structure combined with transformers attains critical yield forecasting proficiency towards improving food security, lowering prices, and reducing waste. We find data availability to be a continued difficulty however using our premonition network and our own collected data we attain yield forecasts 3 weeks ahead with a a testing set RMSE loss of 0.08 across our latest season.

The pre-training of masked language models (MLMs) consumes massive computation to achieve good results on downstream NLP tasks, resulting in a large carbon footprint. In the vanilla MLM, the virtual tokens, [MASK]s, act as placeholders and gather the contextualized information from unmasked tokens to restore the corrupted information. It raises the question of whether we can append [MASK]s at a later layer, to reduce the sequence length for earlier layers and make the pre-training more efficient. We show: (1) [MASK]s can indeed be appended at a later layer, being disentangled from the word embedding; (2) The gathering of contextualized information from unmasked tokens can be conducted with a few layers. By further increasing the masking rate from 15% to 50%, we can pre-train RoBERTa-base and RoBERTa-large from scratch with only 78% and 68% of the original computational budget without any degradation on the GLUE benchmark. When pre-training with the original budget, our method outperforms RoBERTa for 6 out of 8 GLUE tasks, on average by 0.4%.

In this paper, we present DuReader_retrieval, a large-scale Chinese dataset for passage retrieval. DuReader_retrieval contains more than 90K queries and over 8M unique passages from a commercial search engine. To alleviate the shortcomings of other datasets and ensure the quality of our benchmark, we (1) reduce the false negatives in development and test sets by manually annotating results pooled from multiple retrievers, and (2) remove the training queries that are semantically similar to the development and testing queries. Additionally, we provide two out-of-domain testing sets for cross-domain evaluation, as well as a set of human translated queries for for cross-lingual retrieval evaluation. The experiments demonstrate that DuReader_retrieval is challenging and a number of problems remain unsolved, such as the salient phrase mismatch and the syntactic mismatch between queries and paragraphs. These experiments also show that dense retrievers do not generalize well across domains, and cross-lingual retrieval is essentially challenging. DuReader_retrieval is publicly available at https://github.com/baidu/DuReader/tree/master/DuReader-Retrieval.

Tuberculosis (TB), an infectious bacterial disease, is a significant cause of death, especially in low-income countries, with an estimated ten million new cases reported globally in $2020$. While TB is treatable, non-adherence to the medication regimen is a significant cause of morbidity and mortality. Thus, proactively identifying patients at risk of dropping off their medication regimen enables corrective measures to mitigate adverse outcomes. Using a proxy measure of extreme non-adherence and a dataset of nearly $700,000$ patients from four states in India, we formulate and solve the machine learning (ML) problem of early prediction of non-adherence based on a custom rank-based metric. We train ML models and evaluate against baselines, achieving a $\sim 100\%$ lift over rule-based baselines and $\sim 214\%$ over a random classifier, taking into account country-wide large-scale future deployment. We deal with various issues in the process, including data quality, high-cardinality categorical data, low target prevalence, distribution shift, variation across cohorts, algorithmic fairness, and the need for robustness and explainability. Our findings indicate that risk stratification of non-adherent patients is a viable, deployable-at-scale ML solution. As the official AI partner of India's Central TB Division, we are working on multiple city and state-level pilots with the goal of pan-India deployment.

This post takes a closer look at the state of multilingual AI. How multilingual are current models? What are the recent contributions and remaining challenges?

This morning, before checking in on my young son or making a coffee, I opened the Duolingo app on my phone and translated "They love smelling meat" into Italian. I've been starting my days like this for a few months now: wake up, wash face, grapple with the gerund. I usually spend between 10 and 20 minutes on it while the kettle boils or I load CBeebies or write some emails. Duolingo is a language learning app and pretty simple to use. After you've chosen which language you want to learn, you are presented with about 100 skill-sets divided by scenario or grammar (grocery shopping, the future tense and so on).