Dengue fever is a virulent disease spreading over 100 tropical and subtropical countries in Africa, the Americas, and Asia. This arboviral disease affects around 400 million people globally, severely distressing the healthcare systems. The unavailability of a specific drug and ready-to-use vaccine makes the situation worse. Hence, policymakers must rely on early warning systems to control intervention-related decisions. Forecasts routinely provide critical information for dangerous epidemic events. However, the available forecasting models (e.g., weather-driven mechanistic, statistical time series, and machine learning models) lack a clear understanding of different components to improve prediction accuracy and often provide unstable and unreliable forecasts. This study proposes an ensemble wavelet neural network with exogenous factor(s) (XEWNet) model that can produce reliable estimates for dengue outbreak prediction for three geographical regions, namely San Juan, Iquitos, and Ahmedabad. The proposed XEWNet model is flexible and can easily incorporate exogenous climate variable(s) confirmed by statistical causality tests in its scalable framework. The proposed model is an integrated approach that uses wavelet transformation into an ensemble neural network framework that helps in generating more reliable long-term forecasts. The proposed XEWNet allows complex non-linear relationships between the dengue incidence cases and rainfall; however, mathematically interpretable, fast in execution, and easily comprehensible. The proposal's competitiveness is measured using computational experiments based on various statistical metrics and several statistical comparison tests. In comparison with statistical, machine learning, and deep learning methods, our proposed XEWNet performs better in 75% of the cases for short-term and long-term forecasting of dengue incidence.

With advanced imaging, sequencing, and profiling technologies, multiple omics data become increasingly available and hold promises for many healthcare applications such as cancer diagnosis and treatment. Multimodal learning for integrative multi-omics analysis can help researchers and practitioners gain deep insights into human diseases and improve clinical decisions. However, several challenges are hindering the development in this area, including the availability of easily accessible open-source tools. This survey aims to provide an up-to-date overview of the data challenges, fusion approaches, datasets, and software tools from several new perspectives. We identify and investigate various omics data challenges that can help us understand the field better. We categorize fusion approaches comprehensively to cover existing methods in this area. We collect existing open-source tools to facilitate their broader utilization and development. We explore a broad range of omics data modalities and a list of accessible datasets. Finally, we summarize future directions that can potentially address existing gaps and answer the pressing need to advance multimodal learning for multi-omics data analysis.

Purpose: Considering several patients screened due to COVID-19 pandemic, computer-aided detection has strong potential in assisting clinical workflow efficiency and reducing the incidence of infections among radiologists and healthcare providers. Since many confirmed COVID-19 cases present radiological findings of pneumonia, radiologic examinations can be useful for fast detection. Therefore, chest radiography can be used to fast screen COVID-19 during the patient triage, thereby determining the priority of patient's care to help saturated medical facilities in a pandemic situation. Methods: In this paper, we propose a new learning scheme called self-supervised transfer learning for detecting COVID-19 from chest X-ray (CXR) images. We compared six self-supervised learning (SSL) methods (Cross, BYOL, SimSiam, SimCLR, PIRL-jigsaw, and PIRL-rotation) with the proposed method. Additionally, we compared six pretrained DCNNs (ResNet18, ResNet50, ResNet101, CheXNet, DenseNet201, and InceptionV3) with the proposed method. We provide quantitative evaluation on the largest open COVID-19 CXR dataset and qualitative results for visual inspection. Results: Our method achieved a harmonic mean (HM) score of 0.985, AUC of 0.999, and four-class accuracy of 0.953. We also used the visualization technique Grad-CAM++ to generate visual explanations of different classes of CXR images with the proposed method to increase the interpretability. Conclusions: Our method shows that the knowledge learned from natural images using transfer learning is beneficial for SSL of the CXR images and boosts the performance of representation learning for COVID-19 detection. Our method promises to reduce the incidence of infections among radiologists and healthcare providers.

In recent years, there has been a surge of interest in research on automatic mental health detection (MHD) from social media data leveraging advances in natural language processing and machine learning techniques. While significant progress has been achieved in this interdisciplinary research area, the vast majority of work has treated MHD as a binary classification task. The multiclass classification setup is, however, essential if we are to uncover the subtle differences among the statistical patterns of language use associated with particular mental health conditions. Here, we report on experiments aimed at predicting six conditions (anxiety, attention deficit hyperactivity disorder, bipolar disorder, post-traumatic stress disorder, depression, and psychological stress) from Reddit social media posts. We explore and compare the performance of hybrid and ensemble models leveraging transformer-based architectures (BERT and RoBERTa) and BiLSTM neural networks trained on within-text distributions of a diverse set of linguistic features. This set encompasses measures of syntactic complexity, lexical sophistication and diversity, readability, and register-specific ngram frequencies, as well as sentiment and emotion lexicons. In addition, we conduct feature ablation experiments to investigate which types of features are most indicative of particular mental health conditions.

In recent years, there has been increased interest in building predictive models that harness natural language processing and machine learning techniques to detect emotions from various text sources, including social media posts, micro-blogs or news articles. Yet, deployment of such models in real-world sentiment and emotion applications faces challenges, in particular poor out-of-domain generalizability. This is likely due to domain-specific differences (e.g., topics, communicative goals, and annotation schemes) that make transfer between different models of emotion recognition difficult. In this work we propose approaches for text-based emotion detection that leverage transformer models (BERT and RoBERTa) in combination with Bidirectional Long Short-Term Memory (BiLSTM) networks trained on a comprehensive set of psycholinguistic features. First, we evaluate the performance of our models within-domain on two benchmark datasets: GoEmotion and ISEAR. Second, we conduct transfer learning experiments on six datasets from the Unified Emotion Dataset to evaluate their out-of-domain robustness. We find that the proposed hybrid models improve the ability to generalize to out-of-distribution data compared to a standard transformer-based approach. Moreover, we observe that these models perform competitively on in-domain data.

State-of-the-art text simplification (TS) systems adopt end-to-end neural network models to directly generate the simplified version of the input text, and usually function as a blackbox. Moreover, TS is usually treated as an all-purpose generic task under the assumption of homogeneity, where the same simplification is suitable for all. In recent years, however, there has been increasing recognition of the need to adapt the simplification techniques to the specific needs of different target groups. In this work, we aim to advance current research on explainable and controllable TS in two ways: First, building on recently proposed work to increase the transparency of TS systems, we use a large set of (psycho-)linguistic features in combination with pre-trained language models to improve explainable complexity prediction. Second, based on the results of this preliminary task, we extend a state-of-the-art Seq2Seq TS model, ACCESS, to enable explicit control of ten attributes. The results of experiments show (1) that our approach improves the performance of state-of-the-art models for predicting explainable complexity and (2) that explicitly conditioning the Seq2Seq model on ten attributes leads to a significant improvement in performance in both within-domain and out-of-domain settings.

Speech systems are sensitive to accent variations. This is especially challenging in the Indian context, with an abundance of languages but a dearth of linguistic studies characterising pronunciation variations. The growing number of L2 English speakers in India reinforces the need to study accents and L1-L2 interactions. We investigate the accents of Indian English (IE) speakers and report in detail our observations, both specific and common to all regions. In particular, we observe the phonemic variations and phonotactics occurring in the speakers' native languages and apply this to their English pronunciations. We demonstrate the influence of 18 Indian languages on IE by comparing the native language pronunciations with IE pronunciations obtained jointly from existing literature studies and phonetically annotated speech of 80 speakers. Consequently, we are able to validate the intuitions of Indian language influences on IE pronunciations by justifying pronunciation rules from the perspective of Indian language phonology. We obtain a comprehensive description in terms of universal and region-specific characteristics of IE, which facilitates accent conversion and adaptation of existing ASR and TTS systems to different Indian accents.

Self-training has been shown to be helpful in addressing data scarcity for many domains, including vision, speech, and language. Specifically, self-training, or pseudo-labeling, labels unsupervised data and adds that to the training pool. In this work, we investigate and use pseudo-labeling for a recently proposed novel setup: joint transcription and translation of speech, which suffers from an absence of sufficient data resources. We show that under such data-deficient circumstances, the unlabeled data can significantly vary in domain from the supervised data, which results in pseudo-label quality degradation. We investigate two categories of remedies that require no additional supervision and target the domain mismatch: pseudo-label filtering and data augmentation. We show that pseudo-label analysis and processing as such results in additional gains on top of the vanilla pseudo-labeling setup resulting in total improvements of up to 0.6% absolute WER and 2.2 BLEU points.

Crop type maps are critical for tracking agricultural land use and estimating crop production. Remote sensing has proven an efficient and reliable tool for creating these maps in regions with abundant ground labels for model training, yet these labels remain difficult to obtain in many regions and years. NASA's Global Ecosystem Dynamics Investigation (GEDI) spaceborne lidar instrument, originally designed for forest monitoring, has shown promise for distinguishing tall and short crops. In the current study, we leverage GEDI to develop wall-to-wall maps of short vs tall crops on a global scale at 10 m resolution for 2019-2021. Specifically, we show that (1) GEDI returns can reliably be classified into tall and short crops after removing shots with extreme view angles or topographic slope, (2) the frequency of tall crops over time can be used to identify months when tall crops are at their peak height, and (3) GEDI shots in these months can then be used to train random forest models that use Sentinel-2 time series to accurately predict short vs. tall crops. Independent reference data from around the world are then used to evaluate these GEDI-S2 maps. We find that GEDI-S2 performed nearly as well as models trained on thousands of local reference training points, with accuracies of at least 87% and often above 90% throughout the Americas, Europe, and East Asia. Systematic underestimation of tall crop area was observed in regions where crops frequently exhibit low biomass, namely Africa and South Asia, and further work is needed in these systems. Although the GEDI-S2 approach only differentiates tall from short crops, in many landscapes this distinction goes a long way toward mapping the main individual crop types. The combination of GEDI and Sentinel-2 thus presents a very promising path towards global crop mapping with minimal reliance on ground data.

Making sense of multiple modalities can yield a more comprehensive description of real-world phenomena. However, learning the co-representation of diverse modalities is still a long-standing endeavor in emerging machine learning applications and research. Previous generative approaches for multimodal input approximate a joint-modality posterior by uni-modality posteriors as product-of-experts (PoE) or mixture-of-experts (MoE). We argue that these approximations lead to a defective bound for the optimization process and loss of semantic connection among modalities. This paper presents a novel variational method on sets called the Set Multimodal VAE (SMVAE) for learning a multimodal latent space while handling the missing modality problem. By modeling the joint-modality posterior distribution directly, the proposed SMVAE learns to exchange information between multiple modalities and compensate for the drawbacks caused by factorization. In public datasets of various domains, the experimental results demonstrate that the proposed method is applicable to order-agnostic cross-modal generation while achieving outstanding performance compared to the state-of-the-art multimodal methods. The source code for our method is available online https://anonymous.4open.science/r/SMVAE-9B3C/.