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QANet - Quality Assurance Network for Microscopy Cell Segmentation

arXiv.org Artificial Intelligence

Tools and methods for automatic image segmentation are rapidly developing, each with its own strengths and weaknesses. While these methods are designed to be as general as possible, there are no guarantees for their performance on new data. The choice between methods is usually based on benchmark performance whereas the data in the benchmark can be significantly different than that of the user. We introduce a novel Deep Learning method which, given an image and a proposed corresponding segmentation, estimates the Intersection over Union measure (IoU) with respect to the unknown ground truth. We refer to this method as a Quality Assurance Network - QANet. The QANet is designed to give the user an estimate of the segmentation quality on the users own, private, data without the need for human inspection or labelling. It is based on the RibCage Network architecture, originally proposed as a discriminator in an adversarial network framework. Promising IoU prediction results are demonstrated based on the Cell Segmentation Benchmark. The code is freely available at: ANONYMOUS.


How to do Semantic Segmentation using Deep learning

#artificialintelligence

Unlike classification where the end result of the very deep network is the only important thing, semantic segmentation not only requires discrimination at pixel level but also a mechanism to project the discriminative features learnt at different stages of the encoder onto the pixel space. Different approaches employ different mechanisms as a part of the decoding mechanism. Let's explore the 3 main approaches: The region-based methods generally follow the "segmentation using recognition" pipeline, which first extracts free-form regions from an image and describes them, followed by region-based classification. At test time, the region-based predictions are transformed to pixel predictions, usually by labeling a pixel according to the highest scoring region that contains it. R-CNN (Regions with CNN feature) is one representative work for the region-based methods.


Propagating Uncertainty in Multi-Stage Bayesian Convolutional Neural Networks with Application to Pulmonary Nodule Detection

arXiv.org Machine Learning

Motivated by the problem of computer-aided detection (CAD) of pulmonary nodules, we introduce methods to propagate and fuse uncertainty information in a multi-stage Bayesian convolutional neural network (CNN) architecture. The question we seek to answer is "can we take advantage of the model uncertainty provided by one deep learning model to improve the performance of the subsequent deep learning models and ultimately of the overall performance in a multi-stage Bayesian deep learning architecture?". Our experiments show that propagating uncertainty through the pipeline enables us to improve the overall performance in terms of both final prediction accuracy and model confidence.


Adversarial Examples for Semantic Image Segmentation

arXiv.org Machine Learning

Machine learning methods in general and Deep Neural Networks in particular have shown to be vulnerable to adversarial perturbations. So far this phenomenon has mainly been studied in the context of whole-image classification. In this contribution, we analyse how adversarial perturbations can affect the task of semantic segmentation. We show how existing adversarial attackers can be transferred to this task and that it is possible to create imperceptible adversarial perturbations that lead a deep network to misclassify almost all pixels of a chosen class while leaving network prediction nearly unchanged outside this class.


MaskRNN: Instance Level Video Object Segmentation

Neural Information Processing Systems

Instance level video object segmentation is an important technique for video editing and compression. To capture the temporal coherence, in this paper, we develop MaskRNN, a recurrent neural net approach which fuses in each frame the output of two deep nets for each object instance -- a binary segmentation net providing a mask and a localization net providing a bounding box. Due to the recurrent component and the localization component, our method is able to take advantage of long-term temporal structures of the video data as well as rejecting outliers. We validate the proposed algorithm on three challenging benchmark datasets, the DAVIS-2016 dataset, the DAVIS-2017 dataset, and the Segtrack v2 dataset, achieving state-of-the-art performance on all of them.