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Manifold denoising by Nonlinear Robust Principal Component Analysis

Neural Information Processing Systems

This paper extends robust principal component analysis (RPCA) to nonlinear manifolds. Suppose that the observed data matrix is the sum of a sparse component and a component drawn from some low dimensional manifold. Is it possible to separate them by using similar ideas as RPCA? Is there any benefit in treating the manifold as a whole as opposed to treating each local region independently? We answer these two questions affirmatively by proposing and analyzing an optimization framework that separates the sparse component from the manifold under noisy data.


Demixed Principal Component Analysis

Neural Information Processing Systems

In many experiments, the data points collected live in high-dimensional observation spaces, yet can be assigned a set of labels or parameters. In electrophysiological recordings, for instance, the responses of populations of neurons generally depend on mixtures of experimentally controlled parameters. The heterogeneity and diversity of these parameter dependencies can make visualization and interpretation of such data extremely difficult. Standard dimensionality reduction techniques such as principal component analysis (PCA) can provide a succinct and complete description of the data, but the description is constructed independent of the relevant task variables and is often hard to interpret. Here, we start with the assumption that a particularly informative description is one that reveals the dependency of the high-dimensional data on the individual parameters.


Robust Principal Component Analysis with Adaptive Neighbors

Neural Information Processing Systems

Suppose certain data points are overly contaminated, then the existing principal component analysis (PCA) methods are frequently incapable of filtering out and eliminating the excessively polluted ones, which potentially lead to the functional degeneration of the corresponding models. To tackle the issue, we propose a general framework namely robust weight learning with adaptive neighbors (RWL-AN), via which adaptive weight vector is automatically obtained with both robustness and sparse neighbors. More significantly, the degree of the sparsity is steerable such that only exact k well-fitting samples with least reconstruction errors are activated during the optimization, while the residual samples, i.e., the extreme noised ones are eliminated for the global robustness. Additionally, the framework is further applied to PCA problem to demonstrate the superiority and effectiveness of the proposed RWL-AN model. Papers published at the Neural Information Processing Systems Conference.


Fast Algorithms for Gaussian Noise Invariant Independent Component Analysis

Neural Information Processing Systems

The performance of standard algorithms for Independent Component Analysis quickly deteriorates under the addition of Gaussian noise. This is partially due to a common first step that typically consists of whitening, i.e., applying Principal Component Analysis (PCA) and rescaling the components to have identity covariance, which is not invariant under Gaussian noise. In our paper we develop the first practical algorithm for Independent Component Analysis that is provably invariant under Gaussian noise. The two main contributions of this work are as follows: 1. We develop and implement a more efficient version of a Gaussian noise invariant decorrelation (quasi-orthogonalization) algorithm using Hessians of the cumulant functions.


Modularity Component Analysis versus Principal Component Analysis

arXiv.org Machine Learning

In this paper the exact linear relation between the leading eigenvectors of the modularity matrix and the singular vectors of an uncentered data matrix is developed. Based on this analysis the concept of a modularity component is defined, and its properties are developed. It is shown that modularity component analysis can be used to cluster data similar to how traditional principal component analysis is used except that modularity component analysis does not require data centering.