Goto

Collaborating Authors

Artificial Intelligence: Deep Learning for Grading Prostate Cancer

#artificialintelligence

Basics: What is a Gleason Score? One important component of staging your cancer is the grade of the cancer. While the stage of your cancer looks at where the cancer is present in your body -- how it is behaving at the macro level -- the grade describes what the actual cancer cells look like under a microscope -- how they are behaving on a micro level. Traditionally, prostate cancer grades were described according to the Gleason Score, a system named for the pathologist who developed it in the 1960s. Dr. Donald Gleason realized that cancerous cells fall into 5 distinct patterns as they change from normal cells to tumor cells.


Improving Prostate Cancer Detection with Breast Histopathology Images

arXiv.org Machine Learning

Deep neural networks have introduced significant advancements in the field of machine learning-based analysis of digital pathology images including prostate tissue images. With the help of transfer learning, classification and segmentation performance of neural network models have been further increased. However, due to the absence of large, extensively annotated, publicly available prostate histopathology datasets, several previous studies employ datasets from well-studied computer vision tasks such as ImageNet dataset. In this work, we propose a transfer learning scheme from breast histopathology images to improve prostate cancer detection performance. We validate our approach on annotated prostate whole slide images by using a publicly available breast histopathology dataset as pre-training. We show that the proposed cross-cancer approach outperforms transfer learning from ImageNet dataset.


Microscope 2.0: An Augmented Reality Microscope with Real-time Artificial Intelligence Integration

arXiv.org Artificial Intelligence

The brightfield microscope is instrumental in the visual examination of both biological and physical samples at sub-millimeter scales. One key clinical application has been in cancer histopathology, where the microscopic assessment of the tissue samples is used for the diagnosis and staging of cancer and thus guides clinical therapy. However, the interpretation of these samples is inherently subjective, resulting in significant diagnostic variability. Moreover, in many regions of the world, access to pathologists is severely limited due to lack of trained personnel. In this regard, Artificial Intelligence (AI) based tools promise to improve the access and quality of healthcare. However, despite significant advances in AI research, integration of these tools into real-world cancer diagnosis workflows remains challenging because of the costs of image digitization and difficulties in deploying AI solutions. Here we propose a cost-effective solution to the integration of AI: the Augmented Reality Microscope (ARM). The ARM overlays AI-based information onto the current view of the sample through the optical pathway in real-time, enabling seamless integration of AI into the regular microscopy workflow. We demonstrate the utility of ARM in the detection of lymph node metastases in breast cancer and the identification of prostate cancer with a latency that supports real-time workflows. We anticipate that ARM will remove barriers towards the use of AI in microscopic analysis and thus improve the accuracy and efficiency of cancer diagnosis. This approach is applicable to other microscopy tasks and AI algorithms in the life sciences and beyond.


TriResNet: A Deep Triple-stream Residual Network for Histopathology Grading

arXiv.org Artificial Intelligence

While microscopic analysis of histopathological slides is generally considered as the gold standard method for performing cancer diagnosis and grading, the current method for analysis is extremely time consuming and labour intensive as it requires pathologists to visually inspect tissue samples in a detailed fashion for the presence of cancer. As such, there has been significant recent interest in computer aided diagnosis systems for analysing histopathological slides for cancer grading to aid pathologists to perform cancer diagnosis and grading in a more efficient, accurate, and consistent manner. In this work, we investigate and explore a deep triple-stream residual network (TriResNet) architecture for the purpose of tile-level histopathology grading, which is the critical first step to computer-aided whole-slide histopathology grading. In particular, the design mentality behind the proposed TriResNet network architecture is to facilitate for the learning of a more diverse set of quantitative features to better characterize the complex tissue characteristics found in histopathology samples. Experimental results on two widely-used computer-aided histopathology benchmark datasets (CAMELYON16 dataset and Invasive Ductal Carcinoma (IDC) dataset) demonstrated that the proposed TriResNet network architecture was able to achieve noticeably improved accuracies when compared with two other state-of-the-art deep convolutional neural network architectures. Based on these promising results, the hope is that the proposed TriResNet network architecture could become a useful tool to aiding pathologists increase the consistency, speed, and accuracy of the histopathology grading process.


Thyroid Cancer Malignancy Prediction From Whole Slide Cytopathology Images

arXiv.org Artificial Intelligence

We consider preoperative prediction of thyroid cancer based on ultra-high-resolution whole-slide cytopathology images. Inspired by how human experts perform diagnosis, our approach first identifies and classifies diagnostic image regions containing informative thyroid cells, which only comprise a tiny fraction of the entire image. These local estimates are then aggregated into a single prediction of thyroid malignancy. Several unique characteristics of thyroid cytopathology guide our deep-learning-based approach. While our method is closely related to multiple-instance learning, it deviates from these methods by using a supervised procedure to extract diagnostically relevant regions. Moreover, we propose to simultaneously predict thyroid malignancy, as well as a diagnostic score assigned by a human expert, which further allows us to devise an improved training strategy. Experimental results show that the proposed algorithm achieves performance comparable to human experts, and demonstrate the potential of using the algorithm for screening and as an assistive tool for the improved diagnosis of indeterminate cases.